RegulonDB RegulonDB 10.9: Gene Form
   

insO gene in Escherichia coli K-12 genome

Gene      
Name: insO    Texpresso search in the literature
Synonym(s): ECK0257, ECK4274, ECK4275, ECK4476, G7904, b4283, b4285, b4562, b4623, insN2, insO2, yi91, yi91b, yjhW
Type: Pseudo Gene
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.2
Note(s): Note from ASAP: Interrupted by an IS30 element (ASAP:ABE-0014043) after codon 88 relative to Shigella dysenteriae 197 (ASAP:ADU-0005709); in addition, there is a single nucleotide deletion in a deoxyadenosine hexamer that begins within codon 84, a 118 nucleotide deletion at the IS30 insertion site, a single nucleotide deletion following g.4507501 and a single nucleotide deletion in a deoxyadenosine hexamer that begins with g.4507784
External database links:  
ASAP:
ABE-0014040
ASAP:
ABE-0014050
ASAP:
ABE-0285083
ASAP:
ABE-0285254
ECHOBASE:
EB4747
ECHOBASE:
EB4745
ECOLIHUB:
insO-2
ECOLIHUB:
yjhW
ECOLIHUB:
insN-2
ECOLIWIKI:
b4285
ECOLIWIKI:
b4562
ECOO157CYC:
Z1150
ECOO157CYC:
Z1589
OU-MICROARRAY:
b4285
OU-MICROARRAY:
b4283
STRING:
316407.85677025
UNIPROT:
Q47718
COLOMBOS: insO


Product      
Name: KpLE2 phage-like element; IS911B regulator fragment
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 10.57
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.3 - transposon related
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0003676 - nucleic acid binding
GO:0003677 - DNA binding
biological_process GO:0006310 - DNA recombination
GO:0032196 - transposition
GO:0015074 - DNA integration
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7904-MONOMER
ECOLIWIKI:
b4283
ECOO157CYC:
Z1150-MONOMER
ECOO157CYC:
Z1589-MONOMER
INTERPRO:
IPR009057
INTERPRO:
IPR002514
PFAM:
PF01527
PRIDE:
P39212
REFSEQ:
NP_418703
SMR:
P39212
UNIPROT:
P39212


Operon      
Name: insO         
Operon arrangement:
Transcription unit        Promoter
insN-2


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



RegulonDB