RegulonDB RegulonDB 10.8: Gene Form
   

yjiK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yjiJ yjiK ytiA yjiL yjiKp9 yjiKp9 yjiKp7 yjiKp7 yjiKp6 yjiKp6 yjiJp4 yjiJp4

Gene      
Name: yjiK    Texpresso search in the literature
Synonym(s): ECK4324, G7930, b4333
Genome position(nucleotides): 4562743 <-- 4563603 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
42.62
External database links:  
ASAP:
ABE-0014209
ECHOBASE:
EB2460
OU-MICROARRAY:
b4333
PortEco:
yjiK
STRING:
511145.b4333
COLOMBOS: yjiK


Product      
Name: uncharacterized protein YjiK
Synonym(s): YjiK
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 31.956
Isoelectric point: 6.402
Motif(s):
 
Type Positions Sequence
7 -> 28 LSKRISIIVILFAIVAVCTFFV
38 -> 281 AASFQNYHATIDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDFIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQDSPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDEALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT
11 -> 31 ISIIVILFAIVAVCTFFVQSC

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7930-MONOMER
ECOLIWIKI:
b4333
INTERPRO:
IPR009722
PFAM:
PF06977
PRIDE:
P39382
PROSITE:
PS51257
REFSEQ:
NP_418753
SMR:
P39382
UNIPROT:
P39382


Operon      
Name: yjiK         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yjiJp4 4562682 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yjiKp6 4563635 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yjiKp7 4563730 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yjiKp9 4563734 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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