RegulonDB RegulonDB 10.8: Gene Form
   

yjiL gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yjiM yjiK yjiL ytiA nc6 yjiLp3 yjiLp3 yjiLp2 yjiLp2 yjiKp9 yjiKp9 yjiKp7 yjiKp7 yjiKp6 yjiKp6

Gene      
Name: yjiL    Texpresso search in the literature
Synonym(s): ECK4325, G7931, b4334
Genome position(nucleotides): 4563922 <-- 4564689 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
56.51
External database links:  
ASAP:
ABE-0014212
ECHOBASE:
EB2461
OU-MICROARRAY:
b4334
PortEco:
yjiL
STRING:
511145.b4334
COLOMBOS: yjiL


Product      
Name: putative ATPase, activator of (R)-hydroxyglutaryl-CoA dehdratase
Synonym(s): YjiL
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 27.255
Isoelectric point: 6.664
Motif(s):
 
Type Positions Sequence
5 -> 247 IGIDSGSTATKGILLADGVITRRFLVPTPFRPATAITEAWETLREGLETTPFLTLTGYGRQLVDFADKQVTEISCHGLGARFLAPATRAVIDIGGQDSKVIQLDDDGNLCDFLMNDKCAAGTGRFLEVISRTLGTSVEQLDSITENVTPHAITSMCTVFAESEAISLRSAGVAPEAILAGVINAMARRSANFIARLSCEAPILFTGGVSHCQKFARMLESHLRMPVNTHPDAQFAGAIGAAVI

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0046872 - metal ion binding
GO:0051536 - iron-sulfur cluster binding
GO:0051539 - 4 iron, 4 sulfur cluster binding
Note(s): Note(s): ...[more].
Reference(s): [1] Riley M., et al., 2006
External database links:  
ECOCYC:
G7931-MONOMER
ECOLIWIKI:
b4334
INTERPRO:
IPR008275
INTERPRO:
IPR002731
MODBASE:
P39383
PFAM:
PF01869
PRIDE:
P39383
REFSEQ:
NP_418754
SMR:
P39383
SWISSMODEL:
P39383
UNIPROT:
P39383


Operon      
Name: yjiML         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yjiKp6 4563635 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yjiKp7 4563730 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yjiKp9 4563734 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yjiLp2 4564793 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yjiLp3 4564802 reverse Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Riley M., Abe T., Arnaud MB., Berlyn MK., Blattner FR., Chaudhuri RR., Glasner JD., Horiuchi T., Keseler IM., Kosuge T., Mori H., Perna NT., Plunkett G., Rudd KE., Serres MH., Thomas GH., Thomson NR., Wishart D., Wanner BL., 2006, Escherichia coli K-12: a cooperatively developed annotation snapshot--2005., Nucleic Acids Res 34(1):1-9

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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