RegulonDB RegulonDB 10.8: Gene Form
   

yjiT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yjiV yjiT mcrC yjiS TSS_5148 TSS_5148 TSS_5147 TSS_5147

Gene      
Name: yjiT    Texpresso search in the literature
Synonym(s): ECK4333, G7938, b4342
Genome position(nucleotides): 4572414 --> 4573931 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
44.47
External database links:  
ASAP:
ABE-0014239
ECHOBASE:
EB2468
ECOO157CYC:
Z5897
OU-MICROARRAY:
b4342
PortEco:
yjiT
STRING:
316407.85677084
COLOMBOS: yjiT


Product      
Name: putative uncharacterized protein YjiT
Synonym(s): YjiT
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 56.714
Isoelectric point: 6.326
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7938-MONOMER
ECOLIWIKI:
b4342
ECOO157CYC:
Z5897-MONOMER
PRIDE:
P39391
REFSEQ:
NP_418762
UNIPROT:
P39391


Operon      
Name: yjiT         
Operon arrangement:
Transcription unit        Promoter
yjiT


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_5147 4572362 forward nd [RS-EPT-CBR] [1]
  promoter TSS_5148 4574607 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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