RegulonDB RegulonDB 10.8: Gene Form
   

yjjP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yjjP yjjQ dnaT yjjB bglJ H-NS H-NS yjjQp yjjQp yjjPp yjjPp yjjBp yjjBp dnaTp dnaTp TSS_5159 TSS_5159 TSS_5158 TSS_5158 TSS_5157 TSS_5157

Gene      
Name: yjjP    Texpresso search in the literature
Synonym(s): ECK4354, G7946, b4364
Genome position(nucleotides): 4602088 <-- 4602858 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.62
External database links:  
ASAP:
ABE-0014313
ECHOBASE:
EB2477
OU-MICROARRAY:
b4364
PortEco:
yjjP
STRING:
511145.b4364
COLOMBOS: yjjP


Product      
Name: putative succinate exporter YjjP
Synonym(s): YjjP
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 28.001
Isoelectric point: 8.595
Motif(s):
 
Type Positions Sequence
195 -> 215 IAMAASVLLLVPGFPLINAVA
11 -> 250 RLCIQCGLFLLQHGAESALVDELSSRLGRALGMDSVESSISSNAIVLTTIKDGQCLTSTRKNHDRGINMHVVTEVQHIVILAEHHLLDYKGVEKRFSQIQPLRYPRWLVALMVGLSCACFCKLNNGGWDGAVITFFASTTAMYIRQLLAQRHLHPQINFCLTAFAATTISGLLLQLPTFSNTPTIAMAASVLLLVPGFPLINAVADMFKGHINTGLARWAIASLLTLATCVGVVMALTIW
169 -> 189 FCLTAFAATTISGLLLQLPTF
139 -> 161 DGAVITFFASTTAMYIRQLLAQR
4 -> 26 EQQRAVTRLCIQCGLFLLQHGAE

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.9.B - Putative uncharacterized transport protein
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
biological_process GO:0015744 - succinate transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ECOCYC:
G7946-MONOMER
ECOLIWIKI:
b4364
INTERPRO:
IPR010619
PFAM:
PF06738
PRIDE:
P0ADD5
REFSEQ:
NP_418784
UNIPROT:
P0ADD5


Operon      
Name: yjjP         
Operon arrangement:
Transcription unit        Promoter
yjjP


Transcriptional Regulation      
Display Regulation             
Repressed by: H-NS


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_5157 4601522 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_5158 4601548 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_5159 4601557 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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