RegulonDB

Gene
Name:	gapC
Synonym(s):	ECK1409, G8205, b1416, b1417, b4493
Type:	Pseudo Gene
Genome position(nucleotides):	1489713 <-- 1490713 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	48.05
External database links:

ASAP:	ABE-0285094
ASAP:	ABE-0004727
ECOO157CYC:	GAPC
OU-MICROARRAY:	b1417
OU-MICROARRAY:	b1416
PORTECO:	gapC_1
PORTECO:	gapC_2
REGULONDB:	b4493
M3D:	gapC
COLOMBOS:	gapC
PortEco:	b1416

Product

Name:

glyceraldehyde-3-phosphate dehydrogenase

Sequence:

Get amino acid sequence Fasta Format

Isoelectric point:

10.16

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)

External database links:

ECOCYC:

Operon

Name:

gapC

Operon arrangement:

Transcription unit	Promoter
gapC_1C_2

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_1803 (cluster)	1490746	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 1490745 to 1490746, where the highest frequency is at position 1488770. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_1804 (cluster)	1490754	reverse	For this promoter, there is a cluster of 3 transcription start sites,in the interval 1490752 to 1490754, where the highest frequency is at position 1488777. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	cybBp5	1490761	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.535. P-value: 6.507e-5 Read more >	[ICWHO]	[2]
promoter	cybBp7	1490766	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 4.156. P-value: 2.020e-5 Read more >	[ICWHO]	[2]
promoter	cybBp6	1490887	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.69. P-value: 9.142e-5 Read more >	[ICWHO]	[2]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

Reference(s)