RegulonDB RegulonDB 10.7: Gene Form
   

gapC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

aldA gapC cybB cybBp6 cybBp6 cybBp7 cybBp7 cybBp5 cybBp5 TSS_1804 (cluster) TSS_1804 (cluster) TSS_1803 (cluster) TSS_1803 (cluster)

Gene      
Name: gapC    Texpresso search in the literature
Synonym(s): ECK1409, G8205, b1416, b1417, b4493
Type: Pseudo Gene
Genome position(nucleotides): 1489713 <-- 1490713 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
48.05
External database links:  
ASAP:
ABE-0285094
ASAP:
ABE-0004727
ECOO157CYC:
GAPC
OU-MICROARRAY:
b1417
OU-MICROARRAY:
b1416
PORTECO:
gapC_1
PORTECO:
gapC_2
REGULONDB:
b4493
M3D: gapC
COLOMBOS: gapC
PortEco: b1416


Product      
Name: glyceraldehyde-3-phosphate dehydrogenase
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 10.16
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
External database links:  
ECOCYC:
G8205-MONOMER


Operon      
Name: gapC         
Operon arrangement:
Transcription unit        Promoter
gapC_1C_2


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1803 (cluster) 1490746 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_1804 (cluster) 1490754 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter cybBp5 1490761 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter cybBp7 1490766 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter cybBp6 1490887 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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