RegulonDB RegulonDB 10.6.3: Gene Form
   

yhiM gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yhiJ yhiL yhiN yhiM GadE yhiMp11 yhiMp11 yhiMp9 yhiMp9 yhiMp yhiMp yhiMp10 yhiMp10 yhiJp6 yhiJp6

Gene      
Name: yhiM    Texpresso search in the literature
Synonym(s): ECK3476, EG12228, b3491
Genome position(nucleotides): 3634841 --> 3635893 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
47.1
External database links:  
ASAP:
ABE-0011400
ECHOBASE:
EB2140
ECOCYC:
EG12228
ECOLIHUB:
yhiM
REGULONDB:
b3491
STRING:
511145.b3491
M3D: yhiM
COLOMBOS: yhiM
PortEco: yhiM


Product      
Name: inner membrane protein with a role in acid resistance
Synonym(s): YhiM
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 37.657
Isoelectric point: 7.966
Motif(s):
 
Type Positions Sequence
42 -> 62 VLISLAAICLALFTTAFIIIS
158 -> 178 CLIAVPVLLTLLGFIWSITLL
291 -> 311 IPMIPVFTCLFCLFLASFLAE
1 -> 347 MNIYIGWLFKLIPLIMGLICIALGGFVLESSGQSEYFVAGHVLISLAAICLALFTTAFIIISQLTRGVNTFYNTLFPIIGYAGSIITMIWGWALLAGNDVMADEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPVQAYSSLIGNCLIAVPVLLTLLGFIWSITLLRSADITPHYVAGHVLLGLTAICACLIGLVATIVHQTRNTFSTKEHWLWCYWVIFLGSITVLQGIYVLVSSDASARLAPGIILICLGMICYSIFSKVWLLALVWRRTCSLANRIPMIPVFTCLFCLFLASFLAEMAQTDMGYFIPSRVLVGLGAVCFTLFSIVSILEAGS
75 -> 95 LFPIIGYAGSIITMIWGWALL

 

Classification:
Multifun Terms (GenProtEC)  
  5 - cell processes --> 5.5 - adaptations --> 5.5.4 - pH
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
biological_process GO:0071229 - cellular response to acid chemical
Note(s): Note(s): ...[more].
Evidence: [IEP] Inferred from expression pattern
[IMP] Inferred from mutant phenotype
Reference(s): [1] Altuvia S., et al., 1997
[2] Nguyen TM., et al., 2012
[3] Tucker DL., et al., 2002
External database links:  
ECOCYC:
MONOMER0-2489
ECOLIWIKI:
b3491
INTERPRO:
IPR021240
PFAM:
PF10951
PRIDE:
P37630
PROTEINMODELPORTAL:
P37630
REFSEQ:
NP_417948
UNIPROT:
P37630


Operon      
Name: yhiM         
Operon arrangement:
Transcription unit        Promoter
yhiM


Transcriptional Regulation      
Display Regulation             
Activated by: GadE
Repressed by: H-NS


Regulation by small RNA    
  Display Regulation
small RNA oxyS


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yhiJp6 3632595 reverse Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter yhiMp10 3634635 forward Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter yhiMp9 3634783 forward Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter yhiMp11 3634817 forward Similarity to the consensus
Read more >
[ICWHO] [4]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Altuvia S., Weinstein-Fischer D., Zhang A., Postow L., Storz G., 1997, A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator., Cell 90(1):43-53

 [2] Nguyen TM., Sparks-Thissen RL., 2012, The inner membrane protein, YhiM, is necessary for Escherichia coli (E. coli) survival in acidic conditions., Arch Microbiol 194(7):637-41

 [3] Tucker DL., Tucker N., Conway T., 2002, Gene expression profiling of the pH response in Escherichia coli., J Bacteriol 184(23):6551-8

 [4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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