RegulonDB RegulonDB 10.8: Gene Form
   

insX gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yagB insA2 insAB2 insX insI2 insB2 TSS_469 TSS_469 TSS_468 TSS_468 TSS_467 (cluster) TSS_467 (cluster)

Gene      
Name: insX    Texpresso search in the literature
Synonym(s): ECK0266, ECK4473, G0-10433, b4505, ykgN
Type: Pseudo Gene
Genome position(nucleotides): 280114 <-- 280362 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
46.99
Note(s): Note and comment from ASAP:
C-terminal deletion of 28 nucleotides by an IS30 element (ASAP:ABE-0000910) relative to Shigella flexneri 2457T (ASAP:ABQ-0072810)
The coordinates of insX have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the region of similarity to Shigella flexneri 2457T (ASAP:ABQ-0072810), removing 88 nucleotides from the C-terminus.
External database links:  
ASAP:
ABE-0285026
ECHOBASE:
EB4385
ECOLIWIKI:
b4505
PortEco:
ykgN
STRING:
316407.4902998
UNIPROT:
Q79E92
COLOMBOS: insX


Operon      
Name: yagAB-insX         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_467 (cluster) 279709 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_468 279891 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_469 279893 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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