RegulonDB RegulonDB 10.6.3: Gene Form
   

ymjC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

mpaA ymjC ymjD ycjG TSS_1752 TSS_1752 mpaAp4 mpaAp4 mpaAp2 mpaAp2 TSS_1751 TSS_1751 TSS_1750 TSS_1750

Gene      
Name: ymjC    Texpresso search in the literature
Synonym(s): ECK1323, G0-10446, b4525
Genome position(nucleotides): 1390680 <-- 1390862 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
39.89
External database links:  
ASAP:
ABE-0285046
ECHOBASE:
EB4394
ECOCYC:
G0-10446
ECOLIHUB:
ymjC
REGULONDB:
b4525
STRING:
316407.85674906
M3D: ymjC
COLOMBOS: ymjC
PortEco: ymjC


Product      
Name: putative uncharacterized protein YmjC
Synonym(s): YmjC
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 6.725
Isoelectric point: 11.535
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-2668
ECOLIWIKI:
b4525
INTERPRO:
IPR036291
PRIDE:
Q2EER5
PROTEINMODELPORTAL:
Q2EER5
SMR:
Q2EER5
UNIPROT:
Q2EER5


Operon      
Name: ycjY-ymjDC-mpaA         
Operon arrangement:
Transcription unit        Promoter
ycjY-ymjDC-mpaA
null
null


Transcriptional Regulation      
Display Regulation             
Repressed by: PgrR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1750 1390618 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1751 1390623 reverse nd [RS-EPT-CBR] [1]
  promoter mpaAp2 1390637 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter mpaAp4 1390639 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_1752 1390681 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Mu¿¿iz-Rascado L, Garc¿¿a-Sotelo JS, Weiss V, Solano-Lira H, Mart¿¿nez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hern¿¿ndez S, Alquicira-Hern¿¿ndez K, L¿¿pez-Fuentes A, Porr¿¿n-Sotelo L, Huerta AM, Bonavides-Mart¿¿nez C, Balderas-Mart¿¿nez YI, Pannier L, Olvera M, Labastida A, Jim¿¿nez-Jacinto V, Vega-Alvarado L, Del Moral-Ch¿¿vez V, Hern¿¿ndez-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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