RegulonDB RegulonDB 10.7: Gene Form
   

ypdJ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfdS yfdT torI ypdJ yfdR terminator anti-terminator TSS_2662 (cluster) TSS_2662 (cluster)

Gene      
Name: ypdJ    Texpresso search in the literature
Synonym(s): ECK2358, G0-10461, b4545
Genome position(nucleotides): 2476094 --> 2476234 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
43.26
External database links:  
ASAP:
ABE-0285066
ECHOBASE:
EB4405
PORTECO:
ypdJ
REGULONDB:
b4545
STRING:
316407.85675378
M3D: ypdJ
COLOMBOS: ypdJ
PortEco: ypdJ


Product      
Name: CPS-53 (KpLE1) prophage; putative uncharacterized protein YpdJ
Synonym(s): YpdJ
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 5.315
Isoelectric point: 4.355
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-2683
ECOLIWIKI:
b4545
PRIDE:
Q2EET0
PROTEINMODELPORTAL:
Q2EET0
UNIPROT:
Q2EET0


Operon      
Name: ypdJ         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2662 (cluster) 2476376 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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