RegulonDB RegulonDB 10.7: Gene Form
   

ymiA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

cysB yciX ymiA YjjQ acnAp1 acnAp1 ymiAp6 ymiAp6 ymiAp ymiAp ymiAp7 ymiAp7 TSS_1721 TSS_1721 TSS_1720 TSS_1720 TSS_1719 TSS_1719

Gene      
Name: ymiA    Texpresso search in the literature
Synonym(s): ECK4433, G0-10512, b4522, yciX_1
Genome position(nucleotides): 1335148 --> 1335288 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
48.94
External database links:  
ASAP:
ABE-0285043
PORTECO:
ymiA
REGULONDB:
b4522
STRING:
511145.b4522
M3D: ymiA
COLOMBOS: ymiA
PortEco: ymiA


Product      
Name: uncharacterized protein YmiA
Synonym(s): YmiA
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 5.337
Isoelectric point: 11.579
Motif(s):
 
Type Positions Sequence
22 -> 42 AWLAVFLGSALFWVVVALLIW

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
Reference(s): [1] Wiebe H., et al., 2015
External database links:  
ECOCYC:
MONOMER0-2885
PRIDE:
P0CB62
PROTEINMODELPORTAL:
P0CB62
REFSEQ:
YP_588449
UNIPROT:
P0CB62


Operon      
Name: ymiA-yciX         
Operon arrangement:
Transcription unit        Promoter
 


Transcriptional Regulation      
Display Regulation             
Repressed by: YjjQ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1719 1334133 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1720 1334254 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1721 1334325 forward nd [RS-EPT-CBR] [2]
  promoter ymiAp7 1335056 forward Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter ymiAp6 1335105 forward Similarity to the consensus
Read more >
[ICWHO] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Wiebe H., Gurlebeck D., Gross J., Dreck K., Pannen D., Ewers C., Wieler LH., Schnetz K., 2015, YjjQ Represses Transcription of flhDC and Additional Loci in Escherichia coli., J Bacteriol 197(16):2713-20

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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