RegulonDB RegulonDB 10.10: Gene Form
   

insEF5 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insEF5 gatD yegS insF5 insE5 TSS_2406 (cluster) TSS_2406 (cluster)

Gene      
Name: insEF5    Texpresso search in the literature
Synonym(s): G0-10528
Genome position(nucleotides): 2170236 --> 2171398 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.91
External database links:  
ASAP:
 ABE-0006917
ECOLIHUB:
 insEF-5
COLOMBOS: insEF5


Product      
Name: IS3 element transposase
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 44.967
Isoelectric point: 11.433
Motif(s):
 
Type Positions Sequence
330 -> 386 KASFIR*KWNVSMENTLSAGK*CGQRCLIISNVITIGGGGTVGVAASVRNNLKTRTS
151 -> 200 LSSRLLPGQNSVTVPHA*RMNCVLRVTPLT*KPWRQACAVRD*GQRPPGS
226 -> 323 ARTRSGQETSRTYVQMKAGCIWQWSLTCGHVPLLAGQCRHA*RRNWPAMPCRWRCGGVRGPGTLSFTRTVEASTVQQIIRRN*SGIICVEV*AQKVAA
12 -> 78 RKQHSPEFRSEALKLAERIGVTAAARELSLYESQLYNWRSKQQNQQTSSERELEMSTEIARLKRQLA

 
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.3 - transposon related
Gene Ontology Terms (GO)  
External database links:  
ECOCYC:
 MONOMER0-4249
PFAM:
 PF13333
PFAM:
 PF13276
PFAM:
 PF00665
PFAM:
 PF01527


Operon      
Name: insE5EF5F5         
Operon arrangement:
Transcription unit        Promoter
insE5EF5F5


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2406 (cluster) 2172607 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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