RegulonDB RegulonDB 10.8: Gene Form
   

yncK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insQ ydcL yncK terminator TSS_1812 TSS_1812

Gene      
Name: yncK    Texpresso search in the literature
Synonym(s): ECK1425, G0-10557, b4530, b4531, b4578, insP
Type: Pseudo Gene
Genome position(nucleotides): 1503218 <-- 1503649 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
45.83
External database links:  
ASAP:
ABE-0285051
ASAP:
ABE-0285052
ASAP:
ABE-0285110
ECOLIWIKI:
b4531
PortEco:
yncK_2
PortEco:
yncK_1
COLOMBOS: yncK


Operon      
Name: yncK         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1812 1503657 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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