RegulonDB RegulonDB 10.7: Gene Form
   

uof gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

fldA fur chiQ uof OxyR SoxS OxyR CRP Fur Fur TSS_821 TSS_821 uofp uofp TSS_820 TSS_820 furpb furpb furpa furpa TSS_817 TSS_817 TSS_816 TSS_816 TSS_815 TSS_815 TSS_814 TSS_814 TSS_813 TSS_813

Gene      
Name: uof    Texpresso search in the literature
Synonym(s): ECK4461, G0-10580, b4637
Genome position(nucleotides): 710639 <-- 710725 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
40.23
External database links:  
PORTECO:
uof
REGULONDB:
b4637
STRING:
511145.b4637
M3D: uof
COLOMBOS: uof
PortEco: uof


Product      
Name: RyhB-regulated fur leader peptide
Synonym(s): Uof
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 3.109
Isoelectric point: 10.306
Classification:
Multifun Terms (GenProtEC)  
  3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional
Gene Ontology Terms (GO)  
biological_process GO:0006417 - regulation of translation
Note(s): Note(s): ...[more].
Evidence: [IDA] Inferred from direct assay
Reference(s): [1] Vecerek B., et al., 2007
External database links:  
ECOCYC:
MONOMER0-2801
ECOLIWIKI:
b4637
PRIDE:
A8DYP9
PRODB:
PRO_000024184
REFSEQ:
YP_001491546
UNIPROT:
A8DYP9


Operon      
Name: fldA-uof-fur         
Operon arrangement:
Transcription unit        Promoter
fur
fur
uof-fur
fldA-uof-fur


Transcriptional Regulation      
Display Regulation             
Activated by: OxyR, SoxS


Regulation by small RNA    
  Display Regulation
small RNA ryhB


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_813 710473 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_814 710482 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_815 710700 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_816 710711 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_817 710713 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_820 710828 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_821 711001 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Vecerek B., Moll I., Blasi U., 2007, Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding., EMBO J 26(4):965-75

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


RegulonDB