RegulonDB RegulonDB 10.7: Gene Form
   

ymgJ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ycgI minE ymgJ ymgI terminator TSS_1501 TSS_1501 TSS_1500 TSS_1500

Gene      
Name: ymgJ    Texpresso search in the literature
Synonym(s): ECK4404, G0-10590, b4594
Genome position(nucleotides): 1223264 --> 1223449 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
38.17
External database links:  
ASAP:
ABE-0285151
PORTECO:
ymgJ
REGULONDB:
b4594
STRING:
511145.b4594
M3D: ymgJ
COLOMBOS: ymgJ
PortEco: ymgJ


Product      
Name: uncharacterized protein YmgJ
Synonym(s): YmgJ
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 7.362
Isoelectric point: 11.199
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-2819
ECOLIWIKI:
b4594
PRIDE:
A5A612
PROTEINMODELPORTAL:
A5A612
REFSEQ:
YP_001165315
UNIPROT:
A5A612


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1500 1223097 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1501 1223746 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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