RegulonDB RegulonDB 10.7: Gene Form
   

yciZ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yciT yciZ ymiD pdeR yciZp yciZp TSS_1730 TSS_1730 yciTp1 yciTp1 yciTp yciTp

Gene      
Name: yciZ    Texpresso search in the literature
Synonym(s): ECK4406, G0-10591, b4596, deoL
Genome position(nucleotides): 1344436 <-- 1344609 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
47.7
External database links:  
ASAP:
ABE-0285180
PORTECO:
yciZ
REGULONDB:
b4596
STRING:
511145.b4596
M3D: yciZ
COLOMBOS: yciZ
PortEco: yciZ


Product      
Name: UPF0509 protein YciZ
Synonym(s): DeoL, YciZ
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 6.441
Isoelectric point: 4.279
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-2820
ECOLIWIKI:
b4596
INTERPRO:
IPR020887
PRIDE:
A5A614
PROTEINMODELPORTAL:
A5A614
REFSEQ:
YP_001165317
UNIPROT:
A5A614


Operon      
Name: yciZT         
Operon arrangement:
Transcription unit        Promoter
yciT
yciZT


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yciTp1 1344544 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter TSS_1730 1344637 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


RegulonDB