RegulonDB RegulonDB 10.7: Gene Form
   

rydC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

cybB ydcA rydC ydcAp7 ydcAp7 ydcAp6 ydcAp6 rydCp rydCp

Gene      
Name: rydC    Texpresso search in the literature
Synonym(s): ECK4407, G0-10592, b4597
Genome position(nucleotides): 1491443 <-- 1491506 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.0
External database links:  
PORTECO:
rydC
REGULONDB:
b4597
M3D: rydC
COLOMBOS: rydC
PortEco: rydC


Product      
Name: RydC
Synonym(s): ig:877, small regulatory RNA RydC
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  3 - regulation --> 3.1 - type of regulation
Gene Ontology Terms (GO)  
molecular_function GO:0005515 - protein binding
GO:0003729 - mRNA binding
biological_process GO:0035194 - posttranscriptional gene silencing by RNA
GO:1902201 - negative regulation of bacterial-type flagellum-dependent cell motility
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] Antal M., et al., 2005
[2] Zhang A., et al., 2003
External database links:  
ECOCYC:
RNA0-328
ECOLIWIKI:
b4597


Operon      
Name: rydC         
Operon arrangement:
Transcription unit        Promoter
rydC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ydcAp6 1491647 forward Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter ydcAp7 1491653 forward Similarity to the consensus
Read more >
[ICWHO] [3]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Antal M., Bordeau V., Douchin V., Felden B., 2005, A small bacterial RNA regulates a putative ABC transporter., J Biol Chem 280(9):7901-8

 [2] Zhang A., Wassarman KM., Rosenow C., Tjaden BC., Storz G., Gottesman S., 2003, Global analysis of small RNA and mRNA targets of Hfq., Mol Microbiol 50(4):1111-24

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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