RegulonDB

Gene
Name:	ydgU
Synonym(s):	ECK4410, G0-10593, b4601
Genome position(nucleotides):	1671777 --> 1671860 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	42.86
External database links:

ASAP:	ABE-0285184
PortEco:	ydgU
STRING:	511145.b4601
COLOMBOS:	ydgU

Product

Name:

uncharacterized protein YdgU

Synonym(s):

YdgU

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

3.236

Isoelectric point:

9.326

Motif(s):

Type	Positions	Sequence
	4 -> 26	RYRFEFILIILILCALITARFYL

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
Gene Ontology Terms (GO)	cellular_component	GO:0005887 - integral component of plasma membrane

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

PRIDE:

REFSEQ:

UNIPROT:

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_1878	1671916	forward	nd	[RS-EPT-CBR]	[1]
promoter	ydgDp4	1671953	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 3.535. P-value: 4.725e-5 Read more >	[ICWHO]	[2]
promoter	ydgDp7	1671957	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 5.233. P-value: 9.904e-5 Read more >	[ICWHO]	[2]
promoter	TSS_1879 (cluster)	1671972	forward	For this promoter, there is a cluster of 2 transcription start sites,in the interval 1671972 to 1671973, where the highest frequency is at position 1669997. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

Reference(s)