RegulonDB RegulonDB 10.7: Gene Form
   

ydgU gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydgD asr ydgU TSS_1879 (cluster) TSS_1879 (cluster) ydgDp7 ydgDp7 ydgDp4 ydgDp4 TSS_1878 TSS_1878

Gene      
Name: ydgU    Texpresso search in the literature
Synonym(s): ECK4410, G0-10593, b4601
Genome position(nucleotides): 1671777 --> 1671860 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
42.86
External database links:  
ASAP:
ABE-0285184
PORTECO:
ydgU
REGULONDB:
b4601
STRING:
511145.b4601
M3D: ydgU
COLOMBOS: ydgU
PortEco: ydgU


Product      
Name: uncharacterized protein YdgU
Synonym(s): YdgU
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 3.236
Isoelectric point: 9.326
Motif(s):
 
Type Positions Sequence
4 -> 26 RYRFEFILIILILCALITARFYL

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005887 - integral component of plasma membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-2821
ECOLIWIKI:
b4601
PRIDE:
A5A617
REFSEQ:
YP_001165320
UNIPROT:
A5A617


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1878 1671916 forward nd [RS-EPT-CBR] [1]
  promoter ydgDp4 1671953 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ydgDp7 1671957 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_1879 (cluster) 1671972 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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