RegulonDB RegulonDB 10.8: Gene Form
   

ohsC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

acpS ryfB shoB ohsC OhsC ohsCp ohsCp TSS_2854 TSS_2854 shoBp shoBp

Gene      
Name: ohsC    Texpresso search in the literature
Synonym(s): ECK4417, G0-10598, b4608, ryfC
Genome position(nucleotides): 2700520 --> 2700596 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
41.56
External database links:  
PortEco:
ohsC
COLOMBOS: ohsC


Product      
Name: OhsC
Synonym(s): RyfC, ig:1583, ryfC, small regulatory RNA OhsC
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.7 - antisense RNA
Gene Ontology Terms (GO)  
biological_process GO:0035194 - posttranscriptional gene silencing by RNA
Note(s): Note(s): ...[more].
Evidence: [IDA] Inferred from direct assay
[IMP] Inferred from mutant phenotype
Reference(s): [1] Fozo EM., et al., 2008
[2] Kawano M., et al., 2005
External database links:  
ECOCYC:
RNA0-330
ECOLIWIKI:
b4608


Operon      
Name: ohsC         
Operon arrangement:
Transcription unit        Promoter
ohsC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2854 2700336 reverse nd [RS-EPT-CBR] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Fozo EM., Kawano M., Fontaine F., Kaya Y., Mendieta KS., Jones KL., Ocampo A., Rudd KE., Storz G., 2008, Repression of small toxic protein synthesis by the Sib and OhsC small RNAs., Mol Microbiol 70(5):1076-93

 [2] Kawano M., Reynolds AA., Miranda-Rios J., Storz G., 2005, Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli., Nucleic Acids Res 33(3):1040-50

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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