RegulonDB RegulonDB 10.8: Gene Form
   

yoeI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

plaP yeeE yeeY yoeI anti-anti-terminator anti-terminator terminator terminator yeeFp2 yeeFp2 yeeEp yeeEp TSS_2321 TSS_2321 TSS_2320 TSS_2320

Gene      
Name: yoeI    Texpresso search in the literature
Synonym(s): ECK4493, G0-10643, b4678
Genome position(nucleotides): 2087052 <-- 2087114 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 44.44
External database links:  
ASAP:
 ABE-0285221
PortEco:
 yoeI
STRING:
 511145.b4678
COLOMBOS: yoeI


Product      
Name: uncharacterized protein YoeI
Synonym(s): YoeI
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 2.242
Isoelectric point: 5.448
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 MONOMER0-2870
REFSEQ:
 YP_002791246
UNIPROT:
 C1P606


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2320 2084549 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2321 2085498 reverse nd [RS-EPT-CBR] [1]
  promoter yeeFp2 2087238 reverse Similarity to the consensus
Read more > 		[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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