RegulonDB RegulonDB 10.8: Gene Form
   

ymjD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ycjY pgrR ymjC ymjD PgrR ycjYp6 ycjYp6 TSS_1753 (cluster) TSS_1753 (cluster) ycjZp7 ycjZp7 TSS_1752 TSS_1752

Gene      
Name: ymjD    Texpresso search in the literature
Synonym(s): ECK4488, G0-10645, b4673
Genome position(nucleotides): 1390868 <-- 1390933 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 36.36
External database links:  
ASAP:
 ABE-0285156
PortEco:
 ymjD
COLOMBOS: ymjD


Product      
Name: uncharacterized protein YmjD
Synonym(s): YmjD
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 2.465
Isoelectric point: 7.717
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 MONOMER0-2872
UNIPROT:
 P0CD93


Operon      
Name: ycjY-ymjDC-mpaA         
Operon arrangement:
Transcription unit        Promoter
ycjY
ycjY-ymjDC-mpaA
 


Transcriptional Regulation      
Display Regulation             
Repressed by: PgrR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1752 1390681 reverse nd [RS-EPT-CBR] [1]
  promoter ycjZp7 1391872 forward Similarity to the consensus
Read more > 		[ICWHO] [2]
  promoter TSS_1753 (cluster) 1391946 forward For this promoter, there
Read more > 		[RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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