RegulonDB RegulonDB 10.7: Gene Form
   

rpsP5' gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

trmD yfiB rplS rpsP5\' TSS_2951 TSS_2951 TSS_2950 TSS_2950 TSS_2949 TSS_2949 TSS_2948 TSS_2948 rplSp1 rplSp1 TSS_2947 TSS_2947

Gene      
Name: rpsP5'    Texpresso search in the literature
Genome position(nucleotides): 2744205 <-- 2744454 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat


Product      
Name: RpsP5'
Synonym(s): ig:1614
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Evidence: [IDA] Inferred from direct assay
Reference(s): [1] Kawano M., et al., 2005


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2947 2744532 reverse nd [RS-EPT-CBR] [2]
  promoter rplSp1 2744642 reverse Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter TSS_2948 2744644 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2949 2744647 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2950 2744657 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2951 2744665 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Kawano M., Reynolds AA., Miranda-Rios J., Storz G., 2005, Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli., Nucleic Acids Res 33(3):1040-50

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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