RegulonDB RegulonDB 10.8: Gene Form
   

oppA5' gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insH21 ychE oppA5\' ychT Lrp Lrp Fis terminator anti-terminator TSS_1622 (cluster) TSS_1622 (cluster)

Gene      
Name: oppA5'    Texpresso search in the literature
Genome position(nucleotides): 1298697 --> 1298951 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat


Product      
Name: OppA5'
Synonym(s): RNA0-359, ig:771
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1622 (cluster) 1299471 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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