RegulonDB RegulonDB 10.8: Gene Form
   

spy3' gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

cho nadE osmE spy3\' ves LexA Fis Fis IHF Fis CyaR chop chop TSS_2052 TSS_2052 TSS_2051 TSS_2051 TSS_2050 TSS_2050 nadEp nadEp osmEp osmEp TSS_2048 (cluster) TSS_2048 (cluster) TSS_2047 (cluster) TSS_2047 (cluster)

Gene      
Name: spy3'    Texpresso search in the literature
Genome position(nucleotides): 1823084 <-- 1823131 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat


Product      
Name: Spy3'
Synonym(s): ig:1096
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Evidence: [IDA] Inferred from direct assay
Reference(s): [1] Kawano M., et al., 2005


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2047 (cluster) 1822275 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [2]
  promoter TSS_2048 (cluster) 1822278 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [2]
  promoter TSS_2050 1822428 forward nd [RS-EPT-CBR] [2]
  promoter TSS_2051 1822436 forward nd [RS-EPT-CBR] [2]
  promoter TSS_2052 1822732 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Kawano M., Reynolds AA., Miranda-Rios J., Storz G., 2005, Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli., Nucleic Acids Res 33(3):1040-50

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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