RegulonDB RegulonDB 10.7: Gene Form
   

sdsN gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

tcyN sdiA sdsN tcyL sdiAp1 sdiAp1 sdiAp1b sdiAp1b sdsNp sdsNp sdiAp2 sdiAp2 sdiAp2b sdiAp2b sdsNp2 sdsNp2 sdiAp3 sdiAp3 sdiAp4 sdiAp4 sdiAp6 sdiAp6

Gene      
Name: sdsN    Texpresso search in the literature
Synonym(s): ECK4576, G0-10699, b4719
Genome position(nucleotides): 1996921 --> 1997057 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
40.88


Product      
Name: small regulatory RNA SdsN
Synonym(s): SdsN
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional
Gene Ontology Terms (GO)  
molecular_function GO:0005515 - protein binding
GO:0003729 - mRNA binding
GO:1990825 - sequence-specific mRNA binding
biological_process GO:0048523 - negative regulation of cellular process
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] Hao Y., et al., 2016
External database links:  
ECOCYC:
RNA0-361


Operon      
Name: sdsN         
Operon arrangement:
Transcription unit        Promoter
sdsN
sdsN


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter sdiAp6 1996851 reverse Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Hao Y., Updegrove TB., Livingston NN., Storz G., 2016, Protection against deleterious nitrogen compounds: role of σS-dependent small RNAs encoded adjacent to sdiA., Nucleic Acids Res 44(14):6935-48

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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