RegulonDB RegulonDB 10.7: Gene Form
   

iroK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

hcaE hcaT hcaR iroK csiE hcaF HcaR terminator hcaEp hcaEp hcaRp hcaRp hcaTp7 hcaTp7 hcaTp6 hcaTp6 hcaTp1 hcaTp1

Gene      
Name: iroK    Texpresso search in the literature
Synonym(s): ECK4518, G0-10716, b4706
Genome position(nucleotides): 2668006 <-- 2668071 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.0
Reference(s): [1] Warnecke TE., et al., 2012
External database links:  
STRING:
511145.b2537
M3D: iroK
COLOMBOS: iroK
PortEco: iroK


Product      
Name: protein IroK
Synonym(s): IroK, small protein IroK
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 2.33
Isoelectric point: 9.692
Classification:
Multifun Terms (GenProtEC)  
  5 - cell processes --> 5.6 - protection
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] Warnecke TE., et al., 2012
External database links:  
ECOCYC:
MONOMER0-4224
PRIDE:
U3PVA8
REFSEQ:
YP_008592385
UNIPROT:
U3PVA8


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter hcaTp1 2667863 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter hcaTp6 2667928 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter hcaTp7 2668053 reverse Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Warnecke TE., Lynch MD., Lipscomb ML., Gill RT., 2012, Identification of a 21 amino acid peptide conferring 3-hydroxypropionic acid stress-tolerance to Escherichia coli., Biotechnol Bioeng 109(5):1347-52

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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