RegulonDB RegulonDB 10.8: Gene Form
   

nc7 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rnb yciW fabI nc7 CysB anti-anti-terminator anti-terminator terminator yciWp4 yciWp4 yciWp yciWp rnbp1 rnbp1 rnbp2 rnbp2 TSS_1732 TSS_1732

Gene      
Name: nc7    Texpresso search in the literature
Genome position(nucleotides): 1349125 --> 1349315 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat


Product      
Name: Nc7
Synonym(s): trans-encoded antisense RNA
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Evidence: [IE] Inferred from experiment
Reference(s): [1] Macvanin M., et al., 2012


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1732 1348735 reverse nd [RS-EPT-CBR] [2]
  promoter yciWp4 1350236 reverse Similarity to the consensus
Read more >
[ICWHO] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Macvanin M., Edgar R., Cui F., Trostel A., Zhurkin V., Adhya S., 2012, Noncoding RNAs binding to the nucleoid protein HU in Escherichia coli., J Bacteriol 194(22):6046-55

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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