RegulonDB RegulonDB 10.7: Gene Form
   

pawZ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dsdC torI pawZ TSS_2662 (cluster) TSS_2662 (cluster)

Gene      
Name: pawZ    Texpresso search in the literature
Synonym(s): ECK4464, G0-16654, b4643
Type: Pseudo Gene
Genome position(nucleotides): 2476584 --> 2476598 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
66.67
Note(s): pawZ: pseudogene of argW, at CPS-53 attachment site
Comment in EcoGene: 16 bp duplicate sequences, attL and attR, flank CPS-53: the last 15 bp of argW (plus 1) and the 15 bp pawZ' tRNA pseudogene fragment (plus 1).


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2662 (cluster) 2476376 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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