RegulonDB RegulonDB 10.8: Gene Form
   

psaA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ypjA ypjF psaA TSS_2985 TSS_2985 TSS_2984 TSS_2984 TSS_2983 TSS_2983

Gene      
Name: psaA    Texpresso search in the literature
Synonym(s): ECK4465, G0-16660, b4645
Type: Pseudo Gene
Genome position(nucleotides): 2777972 --> 2777985 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 78.57
Note(s): psaA: pseudogene of SsrA, at CP4-57 attachment site
Comment in EcoGene: ssrA pseudogene, CP4-57 attachment site duplication; putative defective prophage. A 15 bp duplication flanks CP4-57: the last 15 bp of ssrA and the 14 bp psaA' tRNA pseudogene, plus 1 distal bp.


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2983 2777835 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2984 2778839 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2985 2779236 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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