RegulonDB RegulonDB 10.7: Gene Form
   

ymiB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

pdeR rnb ymiB ymiD FliZ anti-anti-terminator anti-terminator terminator TSS_1732 TSS_1732 pdeRp pdeRp TSS_1731 TSS_1731

Gene      
Name: ymiB    Texpresso search in the literature
Synonym(s): ECK4487, G0-16673, b4672
Genome position(nucleotides): 1346796 --> 1346900 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
30.48


Product      
Name: putative protein YmiB
Synonym(s): YmiB
Sequence: Get amino acid sequence Fasta Format
Cellular location: membrane
Molecular weight: 4.122
Isoelectric point: 10.906
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-4368
PRIDE:
C1P5Z9
PROTEINMODELPORTAL:
C1P5Z9
REFSEQ:
YP_002791239
UNIPROT:
C1P5Z9


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1731 1346842 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1732 1348735 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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