RegulonDB RegulonDB 10.8: Gene Form
   

ykgS gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insAB3 insB3 insA3 ykgS argL argF ArgR ArgR anti-anti-terminator anti-terminator terminator TSS_472 TSS_472 argFp argFp

Gene      
Name: ykgS    Texpresso search in the literature
Synonym(s): ECK4504, G0-16674, b4688
Genome position(nucleotides): 290510 --> 290638 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 42.64
External database links:  
ASAP:
 ABE-0285250
COLOMBOS: ykgS


Product      
Name: CP4-6 prophage; protein YkgS
Synonym(s): YkgS
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 4.63
Isoelectric point: 5.614
Motif(s):
 
Type Positions Sequence
3 -> 38 MIGLLYDFKDYASKMAENMARLAALLHYFSGDGGDI

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 MONOMER0-4436
INTERPRO:
 IPR025048
PFAM:
 PF13148
UNIPROT:
 P0DPM8


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_472 291181 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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