RegulonDB RegulonDB 10.8: Gene Form
   

rseD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

nadB rseA rpoE rseD yfiC IHF GlrR NadR GlrR RcsB NtrC GlrR CRP CpxR DksA DksA DksA-ppGpp DksA-ppGpp DksA-ppGpp DksA-ppGpp ppGpp ppGpp terminator rpoEp1b rpoEp1b TSS_2873 TSS_2873 nadBp nadBp rpoEp2b rpoEp2b rpoEp4 rpoEp4 rpoEp1a rpoEp1a rpoEp5 rpoEp5 rpoEp2a rpoEp2a TSS_2871 TSS_2871 TSS_2870 TSS_2870 rseAp3 rseAp3 TSS_2869 TSS_2869

Gene      
Name: rseD    Texpresso search in the literature
Synonym(s): ECK4582, G0-16690, b4725
Genome position(nucleotides): 2710009 <-- 2710164 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
44.23


Product      
Name: rpoE leader peptide
Synonym(s): RseD
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 6.229
Isoelectric point: 10.73
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
biological_process GO:0006417 - regulation of translation
Note(s): Note(s): ...[more].
Reference(s): [1] Yakhnin H., et al., 2017
External database links:  
ECOCYC:
MONOMER0-4396
UNIPROT:
P0DPC7


Operon      
Name: rseD-rpoE-rseABC         
Operon arrangement:
Transcription unit        Promoter
rseABC
rpoE-rseABC
rpoE-rseABC
rpoE-rseABC
rpoE-rseABC
rpoE-rseABC
rpoE-rseABC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2869 2709043 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2870 2709761 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2871 2709854 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2873 2710392 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Yakhnin H., Aichele R., Ades SE., Romeo T., Babitzke P., 2017, Circuitry Linking the Global Csr- and σE -Dependent Cell Envelope Stress Response Systems., J Bacteriol 199(23)

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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