RegulonDB RegulonDB 10.7: Gene Form
   

yecC3' gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

uvrC uvrY yecC3\' yecU yecF LexA yecFp yecFp uvrYp2 uvrYp2 TSS_2249 (cluster) TSS_2249 (cluster) uvrCp3 uvrCp3 TSS_2248 TSS_2248

Gene      
Name: yecC3'    Texpresso search in the literature
Genome position(nucleotides): 1994930 --> 1995121 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
Evidence: [IE] Inferred from experiment
Reference(s): [1] Raghavan R., et al., 2011


Product      
Name: YecC3'
Synonym(s): RNA0-361
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2248 1994876 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2249 (cluster) 1995403 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Raghavan R., Groisman EA., Ochman H., 2011, Genome-wide detection of novel regulatory RNAs in E. coli., Genome Res 21(9):1487-97

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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