RegulonDB RegulonDB 10.8: Gene Form
   

ymjE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

puuA puuP ymjA ymjE terminator puuPp puuPp ymjAp5 ymjAp5 TSS_1740 TSS_1740 TSS_1739 TSS_1739

Gene      
Name: ymjE    Texpresso search in the literature
Synonym(s): ECK4599, G0-16737, b4742
Genome position(nucleotides): 1359177 <-- 1359341 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
53.94


Product      
Name: protein YmjE
Synonym(s): YmjE
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 5.971
Isoelectric point: 9.385
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-4419
UNIPROT:
P0DPO2


Operon      
Name: puuA-ymjE-puuP         
Operon arrangement:
Transcription unit        Promoter
puuP
puuAP


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1739 1357699 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1740 1357701 reverse nd [RS-EPT-CBR] [1]
  promoter ymjAp5 1357810 reverse Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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