RegulonDB RegulonDB 10.8: Gene Form
   

ymiD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

pdeR yciZ ymiD ymiB FliZ pdeRp pdeRp TSS_1731 TSS_1731 yciZp yciZp TSS_1730 TSS_1730 yciTp1 yciTp1 yciTp yciTp

Gene      
Name: ymiD    Texpresso search in the literature
Synonym(s): ECK4629, G0-17018, b4772
Genome position(nucleotides): 1344647 --> 1344775 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
36.43


Product      
Name: protein YmiD
Synonym(s): YmiD
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 4.937
Isoelectric point: 10.175
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-4484
UNIPROT:
P0DSF0


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yciTp1 1344544 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter TSS_1730 1344637 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1731 1346842 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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