RegulonDB RegulonDB 11.1: Gene Form
   

yadX gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

clcA hemL yadX IscR PdhR PhoP terminator anti-terminator TSS_297 TSS_297 TSS_296 TSS_296 clcAp10 clcAp10 TSS_295 TSS_295 TSS_294 (cluster) TSS_294 (cluster) TSS_293 (cluster) TSS_293 (cluster) hemLp2 hemLp2 TSS_292 (cluster) TSS_292 (cluster) hemLp hemLp hemLp1 hemLp1 TSS_291 TSS_291

Gene      
Name: yadX    Texpresso search in the literature
Synonym(s): ECK4622, G0-17011, b4765
Genome position(nucleotides): 175048 --> 175095
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 37.5


Product      
Name: protein YadX
Synonym(s): YadX
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 1.806
Isoelectric point: 6.478
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 MONOMER0-4478
UNIPROT:
 P0DSE3


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_291 173769 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_292 (cluster) 174930 forward nd [RS-EPT-CBR] [1]
  promoter TSS_293 (cluster) 174942 forward nd [RS-EPT-CBR] [1]
  promoter TSS_294 (cluster) 175008 forward nd [RS-EPT-CBR] [1]
  promoter TSS_295 175012 forward nd [RS-EPT-CBR] [1]
  promoter clcAp10 175052 forward nd [COMP-AINF] [2]
  promoter TSS_296 175074 forward nd [RS-EPT-CBR] [1]
  promoter TSS_297 176147 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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