RegulonDB RegulonDB 10.8: Gene Form
   

ompC3' gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ompC ftp ompC3\' micF CpxR Lrp Lrp AcrR Lrp SoxS Rob MarA Lrp IHF CpxR SoxS CpxR OmpR OmpR YjjQ OmpR Lrp Lrp Lrp Lrp Lrp Lrp Ada MicC RybB RseX anti-anti-terminator anti-terminator terminator micFp micFp ompCp3 ompCp3 ompCp2 ompCp2 ompCp1 ompCp1 TSS_2488 TSS_2488 TSS_2487 TSS_2487 TSS_2486 TSS_2486 TSS_2485 TSS_2485 TSS_2484 TSS_2484 apbEp1 apbEp1

Gene      
Name: ompC3'    Texpresso search in the literature
Genome position(nucleotides): 2311605 <-- 2311711 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat


Product      
Name: OmpC3'
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter apbEp1 2311594 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter TSS_2484 2311836 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2485 2312187 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2486 2312511 forward nd [RS-EPT-CBR] [2]
  promoter TSS_2487 2312654 forward nd [RS-EPT-CBR] [2]
  promoter TSS_2488 2312657 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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