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YiaJ Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
DKG DKG_Ext 3-keto-L-gulonate 3-keto-L-gulonate 6-P CO2 D-xylulose-5-P L-ribulose-5-phosphate D-xylulose L-xylulose-5-phosphate LyxK Sodium Sodium_Ext SgbE SgbH SgbU YiaJ YiaK YiaL YiaM YiaN YiaO yiaJ yiaJ_mRNA yiaKLMNO-lyxK-sgbHUE yiaKLMNO-lyxK-sgbHUE_mRNA YiaO YiaN YiaM


Gensor Unit       
Name: YiaJ
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0019852 - L-ascorbic acid metabolic process
GO:0019324 - L-lyxose metabolic process
GO:0016052 - carbohydrate catabolic process
GO:0046835 - carbohydrate phosphorylation
GO:0034219 - carbohydrate transmembrane transport
GO:0006974 - cellular response to DNA damage stimulus
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cellular_component GO:0005829 - cytosol
GO:0030288 - outer membrane-bounded periplasmic space
GO:0005886 - plasma membrane
molecular_function GO:0033982 - 3-dehydro-L-gulonate-6-phosphate decarboxylase activity
GO:0003677 - DNA binding
GO:0003700 - DNA binding transcription factor activity
GO:0034015 - L-ribulose-5-phosphate 3-epimerase activity
GO:0008742 - L-ribulose-phosphate 4-epimerase activity
GO:0008744 - L-xylulokinase activity
GO:0016832 - aldehyde-lyase activity
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Components: Show/Hide Components Table (26 more...)
Function Name Type
simple_molecule 2,3-dioxo-L-gulonate simple_molecule
simple_molecule 2,3-dioxo-L-gulonate_Ext simple_molecule
simple_molecule 3-keto-L-gulonate simple_molecule
simple_molecule 3-keto-L-gulonate 6-P simple_molecule
simple_molecule CO2 simple_molecule
protein LyxK protein
protein SgbE protein
protein SgbH protein
protein SgbU protein
simple_molecule Sodium simple_molecule
simple_molecule Sodium_Ext simple_molecule
protein YiaJ protein
protein YiaK protein
protein YiaL protein
protein YiaM protein
protein YiaN protein
protein YiaO protein
complex YiaO-YiaN-YiaM complex
simple_molecule ribulose-5-P simple_molecule
simple_molecule xylulose simple_molecule
simple_molecule xylulose 5P simple_molecule
simple_molecule xylulose-P simple_molecule
gene yiaJ gene
RNA yiaJ_mRNA RNA
gene yiaKLMNO-lyxK-sgbHUE gene
RNA yiaKLMNO-lyxK-sgbHUE_mRNA RNA


Reactions       
Showing 20 reactions
YiaJ yiaJ yiaJ_mRNA
Name: yiaJ -> yiaJ_mRNA
Description: Transcription of transcription unit yiaJ. Reaction inhibition by YiaJ.
Type: transcription
Pathway Components: yiaJ - YiaJ -> yiaJ_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor YiaJ protein nd nd
reactant yiaJ gene nd nd
product yiaJ_mRNA RNA nd nd
YiaJ yiaKLMNO-lyxK-sgbHUE yiaKLMNO-lyxK-sgbHUE_mRNA
Name: yiaKLMNO-lyxK-sgbHUE -> yiaKLMNO-lyxK-sgbHUE_mRNA
Description: Transcription of transcription unit yiaKLMNO-lyxK-sgbHUE. Reaction inhibition by YiaJ.
Type: transcription
Pathway Components: yiaKLMNO-lyxK-sgbHUE - YiaJ -> yiaKLMNO-lyxK-sgbHUE_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor YiaJ protein nd nd
reactant yiaKLMNO-lyxK-sgbHUE gene nd nd
product yiaKLMNO-lyxK-sgbHUE_mRNA RNA nd nd
yiaJ_mRNA YiaJ
Name: yiaJ_mRNA -> YiaJ
Description: Translation of YiaJ
Type: translation
Pathway Components: yiaJ_mRNA -> YiaJ
Components:
Function Name Type Evidence Reference(s)
product YiaJ protein nd nd
reactant yiaJ_mRNA RNA nd nd
yiaKLMNO-lyxK-sgbHUE_mRNA YiaK
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaK
Description: Translation of YiaK
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaK
Components:
Function Name Type Evidence Reference(s)
product YiaK protein nd nd
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA nd nd
YiaK 2,3-dioxo-L-gulonate 3-keto-L-gulonate
Name: 2,3-dioxo-L-gulonate -> 3-keto-L-gulonate
Description: Reaction transforming 2,3-dioxo-L-gulonate into 3-keto-L-gulonate
Type: state transition
Pathway Components: 2,3-dioxo-L-gulonate - YiaK -> 3-keto-L-gulonate
Components:
Function Name Type Evidence Reference(s)
reactant 2,3-dioxo-L-gulonate simple_molecule nd nd
product 3-keto-L-gulonate simple_molecule nd nd
catalyzer YiaK protein nd nd
yiaKLMNO-lyxK-sgbHUE_mRNA YiaL
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaL
Description: Translation of YiaL
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaL
Components:
Function Name Type Evidence Reference(s)
product YiaL protein nd nd
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA nd nd
yiaKLMNO-lyxK-sgbHUE_mRNA YiaM
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaM
Description: Translation of YiaM
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaM
Components:
Function Name Type Evidence Reference(s)
product YiaM protein nd nd
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA nd nd
YiaO + YiaM + YiaN YiaO-YiaN-YiaM
Name: YiaO + YiaM + YiaN -> YiaO-YiaN-YiaM
Description: Reaction transforming YiaO, YiaM, YiaN into YiaO-YiaN-YiaM
Type: state transition
Pathway Components: YiaO + YiaM + YiaN -> YiaO-YiaN-YiaM
Components:
Function Name Type Evidence Reference(s)
reactant YiaM protein nd nd
reactant YiaN protein nd nd
reactant YiaO protein nd nd
product YiaO-YiaN-YiaM complex nd nd
YiaO-YiaN-YiaM 2,3-dioxo-L-gulonate_Ext + Sodium_Ext 2,3-dioxo-L-gulonate + Sodium
Name: 2,3-dioxo-L-gulonate_Ext + Sodium_Ext -> 2,3-dioxo-L-gulonate + Sodium
Description: Transport of 2,3-dioxo-L-gulonate_Ext, Sodium_Ext through a bacterial membrane, leading to the presence of 2,3-dioxo-L-gulonate, Sodium inside the cell.
Type: transport
Pathway Components: 2,3-dioxo-L-gulonate_Ext + Sodium_Ext - YiaO-YiaN-YiaM -> 2,3-dioxo-L-gulonate + Sodium
Components:
Function Name Type Evidence Reference(s)
product 2,3-dioxo-L-gulonate simple_molecule nd nd
reactant 2,3-dioxo-L-gulonate_Ext simple_molecule nd nd
product Sodium simple_molecule nd nd
reactant Sodium_Ext simple_molecule nd nd
catalyzer YiaO-YiaN-YiaM complex nd nd
yiaKLMNO-lyxK-sgbHUE_mRNA YiaN
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaN
Description: Translation of YiaN
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaN
Components:
Function Name Type Evidence Reference(s)
product YiaN protein nd nd
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA nd nd
yiaKLMNO-lyxK-sgbHUE_mRNA YiaO
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaO
Description: Translation of YiaO
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaO
Components:
Function Name Type Evidence Reference(s)
product YiaO protein nd nd
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA nd nd
yiaKLMNO-lyxK-sgbHUE_mRNA LyxK
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> LyxK
Description: Translation of LyxK
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> LyxK
Components:
Function Name Type Evidence Reference(s)
product LyxK protein nd nd
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA nd nd
LyxK xylulose xylulose 5P
Name: xylulose -> xylulose 5P
Description: Reaction transforming xylulose into xylulose 5P
Type: state transition
Pathway Components: xylulose - LyxK -> xylulose 5P
Components:
Function Name Type Evidence Reference(s)
catalyzer LyxK protein nd nd
reactant xylulose simple_molecule nd nd
product xylulose 5P simple_molecule nd nd
LyxK 3-keto-L-gulonate 3-keto-L-gulonate 6-P
Name: 3-keto-L-gulonate -> 3-keto-L-gulonate 6-P
Description: Reaction transforming 3-keto-L-gulonate into 3-keto-L-gulonate 6-P
Type: state transition
Pathway Components: 3-keto-L-gulonate - LyxK -> 3-keto-L-gulonate 6-P
Components:
Function Name Type Evidence Reference(s)
reactant 3-keto-L-gulonate simple_molecule nd nd
product 3-keto-L-gulonate 6-P simple_molecule nd nd
catalyzer LyxK protein nd nd
yiaKLMNO-lyxK-sgbHUE_mRNA SgbH
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> SgbH
Description: Translation of SgbH
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> SgbH
Components:
Function Name Type Evidence Reference(s)
product SgbH protein nd nd
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA nd nd
SgbH 3-keto-L-gulonate 6-P xylulose 5P + CO2
Name: 3-keto-L-gulonate 6-P -> xylulose 5P + CO2
Description: Reaction transforming 3-keto-L-gulonate 6-P into xylulose 5P, CO2
Type: state transition
Pathway Components: 3-keto-L-gulonate 6-P - SgbH -> xylulose 5P + CO2
Components:
Function Name Type Evidence Reference(s)
reactant 3-keto-L-gulonate 6-P simple_molecule nd nd
product CO2 simple_molecule nd nd
catalyzer SgbH protein nd nd
product xylulose 5P simple_molecule nd nd
yiaKLMNO-lyxK-sgbHUE_mRNA SgbU
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> SgbU
Description: Translation of SgbU
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> SgbU
Components:
Function Name Type Evidence Reference(s)
product SgbU protein nd nd
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA nd nd
SgbU xylulose 5P ribulose-5-P
Name: xylulose 5P -> ribulose-5-P
Description: Reaction transforming xylulose 5P into ribulose-5-P
Type: state transition
Pathway Components: xylulose 5P - SgbU -> ribulose-5-P
Components:
Function Name Type Evidence Reference(s)
catalyzer SgbU protein nd nd
product ribulose-5-P simple_molecule nd nd
reactant xylulose 5P simple_molecule nd nd
yiaKLMNO-lyxK-sgbHUE_mRNA SgbE
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> SgbE
Description: Translation of SgbE
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> SgbE
Components:
Function Name Type Evidence Reference(s)
product SgbE protein nd nd
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA nd nd
SgbE ribulose-5-P xylulose-P
Name: ribulose-5-P -> xylulose-P
Description: Reaction transforming ribulose-5-P into xylulose-P
Type: state transition
Pathway Components: ribulose-5-P - SgbE -> xylulose-P
Components:
Function Name Type Evidence Reference(s)
catalyzer SgbE protein nd nd
reactant ribulose-5-P simple_molecule nd nd
product xylulose-P simple_molecule nd nd



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