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YefM-YoeB Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          


Gensor Unit       
Name: YefM-YoeB
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0006401 - RNA catabolic process
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0006402 - mRNA catabolic process
GO:0098795 - mRNA cleavage involved in gene silencing
GO:1903507 - negative regulation of nucleic acid-templated transcription
GO:0045892 - negative regulation of transcription, DNA-templated
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molecular_function GO:0004521 - endoribonuclease activity
GO:0016892 - endoribonuclease activity, producing 3'-phosphomonoesters
GO:0005515 - protein binding
GO:0043024 - ribosomal small subunit binding
GO:0043565 - sequence-specific DNA binding
GO:0015643 - toxic substance binding
GO:0003714 - transcription corepressor activity
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Components: Show/Hide Components Table (9 more...)
Function Name Type
simple_molecule RNase product with a 3' phosphate simple_molecule
simple_molecule RNase product with a 5' OH simple_molecule
protein YefM protein
protein YefM-YoeB protein
protein YoeB protein
complex YoeB-YefM complex
simple_molecule mRNA simple_molecule
gene yefM-yoeB gene
RNA yefM-yoeB_mRNA RNA


Reactions       
Showing 5 reactions
YefM-YoeB yefM-yoeB yefM-yoeB_mRNA
Name: yefM-yoeB -> yefM-yoeB_mRNA
Description: Transcription of transcription unit yefM-yoeB. Reaction inhibition by YefM-YoeB.
Type: transcription
Pathway Components: yefM-yoeB - YefM-YoeB -> yefM-yoeB_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor YefM-YoeB protein nd nd
reactant yefM-yoeB gene nd nd
product yefM-yoeB_mRNA RNA nd nd
yefM-yoeB_mRNA YefM
Name: yefM-yoeB_mRNA -> YefM
Description: Translation of YefM
Type: translation
Pathway Components: yefM-yoeB_mRNA -> YefM
Components:
Function Name Type Evidence Reference(s)
product YefM protein nd nd
reactant yefM-yoeB_mRNA RNA nd nd
YoeB + YefM YoeB-YefM
Name: YoeB + YefM -> YoeB-YefM
Description: Reaction transforming YoeB, YefM into YoeB-YefM
Type: state transition
Pathway Components: YoeB + YefM -> YoeB-YefM
Components:
Function Name Type Evidence Reference(s)
reactant YefM protein nd nd
reactant YoeB protein nd nd
product YoeB-YefM complex nd nd
yefM-yoeB_mRNA YoeB
Name: yefM-yoeB_mRNA -> YoeB
Description: Translation of YoeB
Type: translation
Pathway Components: yefM-yoeB_mRNA -> YoeB
Components:
Function Name Type Evidence Reference(s)
product YoeB protein nd nd
reactant yefM-yoeB_mRNA RNA nd nd
YoeB mRNA Products
Name: mRNA -> RNase product with a 3' phosphate + RNase product with a 5' OH
Description: Reaction transforming mRNA into RNase product with a 3' phosphate, RNase product with a 5' OH
Type: state transition
Pathway Components: mRNA - YoeB -> RNase product with a 3' phosphate + RNase product with a 5' OH
Components:
Function Name Type Evidence Reference(s)
product RNase product with a 3' phosphate simple_molecule nd nd
product RNase product with a 5' OH simple_molecule nd nd
catalyzer YoeB protein nd nd
reactant mRNA simple_molecule nd nd



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