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YefM-YoeB Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
YefM YoeB a 3' phosphooligonucleotide a 3'-phosphomononucleotide a double-stranded RNA yefM-yoeB yefM-yoeB_mRNA YefM YoeB


Gensor Unit       
Name: YefM-YoeB
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0045892 - negative regulation of transcription, DNA-templated
GO:0004519 - endonuclease activity
GO:0044010 - single-species biofilm formation
GO:0003677 - DNA binding
GO:0016892 - endoribonuclease activity, producing 3'-phosphomonoesters
GO:0003723 - RNA binding
GO:0043024 - ribosomal small subunit binding
GO:0003714 - transcription corepressor activity
GO:0015643 - toxic substance binding
GO:0004521 - endoribonuclease activity
GO:0006351 - transcription, DNA-templated
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Components:
Function Name Type
RNA yefM-yoeB_mRNA RNA


Reactions       
Showing 5 reactions
yefM-yoeB yefM-yoeB_mRNA
Name: yefM-yoeB -> yefM-yoeB_mRNA
Description: Transcription of transcription unit yefM-yoeB; reaction inhibition by YefM-YoeB.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product yefM-yoeB_mRNA RNA nd nd
reactant yefM-yoeB gene nd nd
yefM-yoeB_mRNA YoeB
Name: yefM-yoeB_mRNA -> YoeB
Description: Translation of YoeB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YoeB protein nd nd
reactant yefM-yoeB_mRNA RNA nd nd
dsRNA a 3′-phosphomononucleotide + a 3′ phosphooligonucleotide
Name: dsRNA -> a 3′-phosphomononucleotide + a 3′ phosphooligonucleotide
Description: Reaction transforming dsRNA into a 3′-phosphomononucleotide, a 3′ phosphooligonucleotide
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a 3′-phosphomononucleotide simple molecule nd nd
reactant dsRNA simple molecule nd nd
product a 3′ phosphooligonucleotide simple molecule nd nd
yefM-yoeB_mRNA YefM
Name: yefM-yoeB_mRNA -> YefM
Description: Translation of YefM
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant yefM-yoeB_mRNA RNA nd nd
product YefM protein nd nd
YefM + YoeB YefM-YoeB
Name: YefM + YoeB -> YefM-YoeB
Description: Reaction transforming YefM, YoeB into YefM-YoeB
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant YefM protein nd nd
product YefM-YoeB complex nd nd
reactant YoeB protein nd nd



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