RegulonDB RegulonDB

XylR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
1-deoxy-D-xylulose 1-deoxy-D-xylulose 5-phosphate D-xylulose D-xylulose-5-P XylA XylB XylF XylG XylH XylR D-xylose D-xylose_Ext phosphate xylAB xylAB_mRNA xylFGHR xylFGHR_mRNA XylR D-xylose XylG XylH XylF


Gensor Unit       
Name: XylR
Classification:
Groups: GUs related to carbon source utilization
Gene Ontology Terms (GO): GO:0043190 - ATP-binding cassette (ABC) transporter complex
GO:0042732 - D-xylose metabolic process
GO:0015752 - D-ribose transport
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0016020 - membrane
GO:0042843 - D-xylose catabolic process
GO:0042597 - periplasmic space
GO:0016887 - ATPase activity
GO:0009045 - xylose isomerase activity
GO:0005737 - cytoplasm
GO:0016310 - phosphorylation
Read more >
Components:
Function Name Type
RNA xylFGHR_mRNA RNA


Reactions       
Showing 14 reactions
XylR + D-xylose XylR-D-xylose
Name: XylR + D-xylose -> XylR-D-xylose
Description: Reaction transforming XylR, D-xylose into XylR-D-xylose
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product XylR-D-xylose complex nd nd
reactant XylR protein nd nd
reactant D-xylose simple molecule nd nd
xylAB xylAB_mRNA
Name: xylAB -> xylAB_mRNA
Description: Transcription of transcription unit xylAB; reaction inhibition by AraC-L-arabinose.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product xylAB_mRNA RNA nd nd
reactant xylAB gene nd nd
xylFGHR xylFGHR_mRNA
Name: xylFGHR -> xylFGHR_mRNA
Description: Transcription of transcription unit xylFGHR; reaction activation by XylR-D-xylose.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant xylFGHR gene nd nd
product xylFGHR_mRNA RNA nd nd
xylFGHR_mRNA XylG
Name: xylFGHR_mRNA -> XylG
Description: Translation of XylG
Type: translation
Components:
Function Name Type Evidence Reference(s)
product XylG protein nd nd
reactant xylFGHR_mRNA RNA nd nd
XylG + XylH + XylF XylG-XylH-XylF
Name: XylG + XylH + XylF -> XylG-XylH-XylF
Description: Reaction transforming XylG, XylH, XylF into XylG-XylH-XylF
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product XylG-XylH-XylF complex nd nd
reactant XylG protein nd nd
reactant XylH protein nd nd
reactant XylF protein nd nd
D-xylose_Ext phosphate + D-xylose
Name: D-xylose_Ext -> phosphate + D-xylose
Description: Transport of D-xylose_Ext through a bacterial membrane, leading to the presence of phosphate, D-xylose inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant D-xylose_Ext simple molecule nd nd
product phosphate simple molecule nd nd
product D-xylose simple molecule nd nd
xylAB_mRNA XylA
Name: xylAB_mRNA -> XylA
Description: Translation of XylA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant xylAB_mRNA RNA nd nd
product XylA protein nd nd
D-xylose D-xylulose
Name: D-xylose -> D-xylulose
Description: Reaction transforming D-xylose into D-xylulose
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product D-xylulose simple molecule nd nd
reactant D-xylose simple molecule nd nd
xylAB_mRNA XylB
Name: xylAB_mRNA -> XylB
Description: Translation of XylB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant xylAB_mRNA RNA nd nd
product XylB protein nd nd
D-xylulose D-xylulose-5-P
Name: D-xylulose -> D-xylulose-5-P
Description: Reaction transforming D-xylulose into D-xylulose-5-P
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product D-xylulose-5-P simple molecule nd nd
reactant D-xylulose simple molecule nd nd
1-deoxy-D-xylulose 1-deoxy-D-xylulose 5-phosphate
Name: 1-deoxy-D-xylulose -> 1-deoxy-D-xylulose 5-phosphate
Description: Reaction transforming 1-deoxy-D-xylulose into 1-deoxy-D-xylulose 5-phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant 1-deoxy-D-xylulose simple molecule nd nd
product 1-deoxy-D-xylulose 5-phosphate simple molecule nd nd
xylFGHR_mRNA XylR
Name: xylFGHR_mRNA -> XylR
Description: Translation of XylR
Type: translation
Components:
Function Name Type Evidence Reference(s)
product XylR protein nd nd
reactant xylFGHR_mRNA RNA nd nd
xylFGHR_mRNA XylF
Name: xylFGHR_mRNA -> XylF
Description: Translation of XylF
Type: translation
Components:
Function Name Type Evidence Reference(s)
product XylF protein nd nd
reactant xylFGHR_mRNA RNA nd nd
xylFGHR_mRNA XylH
Name: xylFGHR_mRNA -> XylH
Description: Translation of XylH
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant xylFGHR_mRNA RNA nd nd
product XylH protein nd nd



RegulonDB