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YdeO Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
GadE MdtE MdtF SafA TolC YdeO a drug a drug_Ext gadE gadE-mdtEF gadE-mdtEF_mRNA gadE_mRNA safA-ydeO safA-ydeO_mRNA TolC MdtE MdtF


Gensor Unit       
Name: YdeO
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0019646 - aerobic electron transport chain
GO:0009061 - anaerobic respiration
GO:0015721 - bile acid and bile salt transport
GO:0006464 - cellular protein modification process
GO:0006974 - cellular response to DNA damage stimulus
GO:0071454 - cellular response to anoxia
Read more >
cellular_component GO:0044569 - [Ni-Fe] hydrogenase complex
GO:0009279 - cell outer membrane
GO:0070069 - cytochrome complex
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0031237 - intrinsic component of periplasmic side of plasma membrane
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molecular_function GO:0051538 - 3 iron, 4 sulfur cluster binding
GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0003677 - DNA binding
GO:0003700 - DNA binding transcription factor activity
GO:0015238 - drug transmembrane transporter activity
GO:0009055 - electron transfer activity
GO:0004175 - endopeptidase activity
Read more >
Components: Show/Hide Components Table (52 more...)
Function Name Type
protein AppA protein
protein AppB protein
protein AppC protein
complex AppC-AppB complex
protein AppX protein
protein DctR protein
protein GadE protein
protein GadW protein
protein HyaA protein
complex HyaA-HyaB-HyaC complex
protein HyaB protein
protein HyaC protein
protein HyaD protein
protein HyaE protein
protein HyaF protein
simple_molecule I(1,2,3,4,5)P5 simple_molecule
protein MdtE protein
protein MdtF protein
protein RcsB protein
complex RcsB-GadE complex
protein SafA protein
protein Slp protein
protein TolC protein
complex TolC-MdtE-MdtF complex
protein UspD protein
protein YdeO protein
protein YiiS protein
gene appCBXA gene
RNA appCBXA_mRNA RNA
simple_molecule drug simple_molecule
simple_molecule drug_Ext simple_molecule
gene gadE gene
gene gadE-mdtEF gene
RNA gadE-mdtEF_mRNA RNA
RNA gadE_mRNA RNA
gene gadW gene
RNA gadW_mRNA RNA
simple_molecule guanosine-diphosphate simple_molecule
simple_molecule guanosine-triphosphate simple_molecule
gene hyaABCDEF gene
RNA hyaABCDEF_mRNA RNA
simple_molecule oxygen_Ext simple_molecule
simple_molecule phosphate simple_molecule
simple_molecule phytate simple_molecule
gene safA-ydeO gene
RNA safA-ydeO_mRNA RNA
gene slp-dctR gene
RNA slp-dctR_mRNA RNA
simple_molecule ubiquinol_Ext simple_molecule
simple_molecule ubiquinone simple_molecule
gene yiiS-uspD gene
RNA yiiS-uspD_mRNA RNA


Reactions       
Showing 37 reactions
YdeO appCBXA appCBXA_mRNA
Name: appCBXA -> appCBXA_mRNA
Description: Transcription of transcription unit appCBXA. Reaction activation by YdeO.
Type: transcription
Pathway Components: appCBXA - YdeO -> appCBXA_mRNA
Components:
Function Name Type Evidence Reference(s)
activator YdeO protein nd nd
reactant appCBXA gene nd nd
product appCBXA_mRNA RNA nd nd
YdeO gadE gadE_mRNA
Name: gadE -> gadE_mRNA
Description: Transcription of transcription unit gadE. Reaction activation by YdeO.
Type: transcription
Pathway Components: gadE - YdeO -> gadE_mRNA
Components:
Function Name Type Evidence Reference(s)
activator YdeO protein nd nd
reactant gadE gene nd nd
product gadE_mRNA RNA nd nd
YdeO gadE-mdtEF gadE-mdtEF_mRNA
Name: gadE-mdtEF -> gadE-mdtEF_mRNA
Description: Transcription of transcription unit gadE-mdtEF. Reaction activation by YdeO.
Type: transcription
Pathway Components: gadE-mdtEF - YdeO -> gadE-mdtEF_mRNA
Components:
Function Name Type Evidence Reference(s)
activator YdeO protein nd nd
reactant gadE-mdtEF gene nd nd
product gadE-mdtEF_mRNA RNA nd nd
YdeO gadW gadW_mRNA
Name: gadW -> gadW_mRNA
Description: Transcription of transcription unit gadW. Reaction activation by YdeO.
Type: transcription
Pathway Components: gadW - YdeO -> gadW_mRNA
Components:
Function Name Type Evidence Reference(s)
activator YdeO protein nd nd
reactant gadW gene nd nd
product gadW_mRNA RNA nd nd
YdeO hyaABCDEF hyaABCDEF_mRNA
Name: hyaABCDEF -> hyaABCDEF_mRNA
Description: Transcription of transcription unit hyaABCDEF. Reaction activation by YdeO.
Type: transcription
Pathway Components: hyaABCDEF - YdeO -> hyaABCDEF_mRNA
Components:
Function Name Type Evidence Reference(s)
activator YdeO protein nd nd
reactant hyaABCDEF gene nd nd
product hyaABCDEF_mRNA RNA nd nd
YdeO safA-ydeO safA-ydeO_mRNA
Name: safA-ydeO -> safA-ydeO_mRNA
Description: Transcription of transcription unit safA-ydeO. Reaction inhibition by YdeO.
Type: transcription
Pathway Components: safA-ydeO - YdeO -> safA-ydeO_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor YdeO protein nd nd
reactant safA-ydeO gene nd nd
product safA-ydeO_mRNA RNA nd nd
YdeO slp-dctR slp-dctR_mRNA
Name: slp-dctR -> slp-dctR_mRNA
Description: Transcription of transcription unit slp-dctR. Reaction activation by YdeO.
Type: transcription
Pathway Components: slp-dctR - YdeO -> slp-dctR_mRNA
Components:
Function Name Type Evidence Reference(s)
activator YdeO protein nd nd
reactant slp-dctR gene nd nd
product slp-dctR_mRNA RNA nd nd
YdeO yiiS-uspD yiiS-uspD_mRNA
Name: yiiS-uspD -> yiiS-uspD_mRNA
Description: Transcription of transcription unit yiiS-uspD. Reaction activation by YdeO.
Type: transcription
Pathway Components: yiiS-uspD - YdeO -> yiiS-uspD_mRNA
Components:
Function Name Type Evidence Reference(s)
activator YdeO protein nd nd
reactant yiiS-uspD gene nd nd
product yiiS-uspD_mRNA RNA nd nd
appCBXA_mRNA AppC
Name: appCBXA_mRNA -> AppC
Description: Translation of AppC
Type: translation
Pathway Components: appCBXA_mRNA -> AppC
Components:
Function Name Type Evidence Reference(s)
product AppC protein nd nd
reactant appCBXA_mRNA RNA nd nd
AppB + AppC AppC-AppB
Name: AppB + AppC -> AppC-AppB
Description: Reaction transforming AppB, AppC into AppC-AppB
Type: state transition
Pathway Components: AppB + AppC -> AppC-AppB
Components:
Function Name Type Evidence Reference(s)
reactant AppB protein nd nd
reactant AppC protein nd nd
product AppC-AppB complex nd nd
AppC-AppB ubiquinol_Ext + oxygen_Ext ubiquinone
Name: ubiquinol_Ext + oxygen_Ext -> ubiquinone
Description: Transport of ubiquinol_Ext, oxygen_Ext through a bacterial membrane, leading to the presence of ubiquinone inside the cell.
Type: transport
Pathway Components: ubiquinol_Ext + oxygen_Ext - AppC-AppB -> ubiquinone
Components:
Function Name Type Evidence Reference(s)
catalyzer AppC-AppB complex nd nd
reactant oxygen_Ext simple_molecule nd nd
reactant ubiquinol_Ext simple_molecule nd nd
product ubiquinone simple_molecule nd nd
appCBXA_mRNA AppB
Name: appCBXA_mRNA -> AppB
Description: Translation of AppB
Type: translation
Pathway Components: appCBXA_mRNA -> AppB
Components:
Function Name Type Evidence Reference(s)
product AppB protein nd nd
reactant appCBXA_mRNA RNA nd nd
appCBXA_mRNA AppX
Name: appCBXA_mRNA -> AppX
Description: Translation of AppX
Type: translation
Pathway Components: appCBXA_mRNA -> AppX
Components:
Function Name Type Evidence Reference(s)
product AppX protein nd nd
reactant appCBXA_mRNA RNA nd nd
appCBXA_mRNA AppA
Name: appCBXA_mRNA -> AppA
Description: Translation of AppA
Type: translation
Pathway Components: appCBXA_mRNA -> AppA
Components:
Function Name Type Evidence Reference(s)
product AppA protein nd nd
reactant appCBXA_mRNA RNA nd nd
AppA phytate I(1,2,3,4,5)P5 + phosphate
Name: phytate -> I(1,2,3,4,5)P5 + phosphate
Description: Reaction transforming phytate into I(1,2,3,4,5)P5, phosphate
Type: state transition
Pathway Components: phytate - AppA -> I(1,2,3,4,5)P5 + phosphate
Components:
Function Name Type Evidence Reference(s)
catalyzer AppA protein nd nd
product I(1,2,3,4,5)P5 simple_molecule nd nd
product phosphate simple_molecule nd nd
reactant phytate simple_molecule nd nd
AppA guanosine-triphosphate guanosine-diphosphate + phosphate
Name: guanosine-triphosphate -> guanosine-diphosphate + phosphate
Description: Reaction transforming guanosine-triphosphate into guanosine-diphosphate, phosphate
Type: state transition
Pathway Components: guanosine-triphosphate - AppA -> guanosine-diphosphate + phosphate
Components:
Function Name Type Evidence Reference(s)
catalyzer AppA protein nd nd
product guanosine-diphosphate simple_molecule nd nd
reactant guanosine-triphosphate simple_molecule nd nd
product phosphate simple_molecule nd nd
gadE_mRNA GadE
Name: gadE_mRNA -> GadE
Description: Translation of GadE
Type: translation
Pathway Components: gadE_mRNA -> GadE
Components:
Function Name Type Evidence Reference(s)
product GadE protein nd nd
reactant gadE_mRNA RNA nd nd
RcsB + GadE RcsB-GadE
Name: RcsB + GadE -> RcsB-GadE
Description: Reaction transforming RcsB, GadE into RcsB-GadE
Type: state transition
Pathway Components: RcsB + GadE -> RcsB-GadE
Components:
Function Name Type Evidence Reference(s)
reactant GadE protein nd nd
reactant RcsB protein nd nd
product RcsB-GadE complex nd nd
yiiS-uspD_mRNA YiiS
Name: yiiS-uspD_mRNA -> YiiS
Description: Translation of YiiS
Type: translation
Pathway Components: yiiS-uspD_mRNA -> YiiS
Components:
Function Name Type Evidence Reference(s)
product YiiS protein nd nd
reactant yiiS-uspD_mRNA RNA nd nd
yiiS-uspD_mRNA UspD
Name: yiiS-uspD_mRNA -> UspD
Description: Translation of UspD
Type: translation
Pathway Components: yiiS-uspD_mRNA -> UspD
Components:
Function Name Type Evidence Reference(s)
product UspD protein nd nd
reactant yiiS-uspD_mRNA RNA nd nd
safA-ydeO_mRNA SafA
Name: safA-ydeO_mRNA -> SafA
Description: Translation of SafA
Type: translation
Pathway Components: safA-ydeO_mRNA -> SafA
Components:
Function Name Type Evidence Reference(s)
product SafA protein nd nd
reactant safA-ydeO_mRNA RNA nd nd
safA-ydeO_mRNA YdeO
Name: safA-ydeO_mRNA -> YdeO
Description: Translation of YdeO
Type: translation
Pathway Components: safA-ydeO_mRNA -> YdeO
Components:
Function Name Type Evidence Reference(s)
product YdeO protein nd nd
reactant safA-ydeO_mRNA RNA nd nd
gadE-mdtEF_mRNA GadE
Name: gadE-mdtEF_mRNA -> GadE
Description: Translation of GadE
Type: translation
Pathway Components: gadE-mdtEF_mRNA -> GadE
Components:
Function Name Type Evidence Reference(s)
product GadE protein nd nd
reactant gadE-mdtEF_mRNA RNA nd nd
gadE-mdtEF_mRNA MdtE
Name: gadE-mdtEF_mRNA -> MdtE
Description: Translation of MdtE
Type: translation
Pathway Components: gadE-mdtEF_mRNA -> MdtE
Components:
Function Name Type Evidence Reference(s)
product MdtE protein nd nd
reactant gadE-mdtEF_mRNA RNA nd nd
MdtF + MdtE + TolC TolC-MdtE-MdtF
Name: MdtF + MdtE + TolC -> TolC-MdtE-MdtF
Description: Reaction transforming MdtF, MdtE, TolC into TolC-MdtE-MdtF
Type: state transition
Pathway Components: MdtF + MdtE + TolC -> TolC-MdtE-MdtF
Components:
Function Name Type Evidence Reference(s)
reactant MdtE protein nd nd
reactant MdtF protein nd nd
reactant TolC protein nd nd
product TolC-MdtE-MdtF complex nd nd
TolC-MdtE-MdtF drug_Ext drug
Name: drug_Ext -> drug
Description: Transport of drug_Ext through a bacterial membrane, leading to the presence of drug inside the cell.
Type: transport
Pathway Components: drug_Ext - TolC-MdtE-MdtF -> drug
Components:
Function Name Type Evidence Reference(s)
catalyzer TolC-MdtE-MdtF complex nd nd
product drug simple_molecule nd nd
reactant drug_Ext simple_molecule nd nd
gadE-mdtEF_mRNA MdtF
Name: gadE-mdtEF_mRNA -> MdtF
Description: Translation of MdtF
Type: translation
Pathway Components: gadE-mdtEF_mRNA -> MdtF
Components:
Function Name Type Evidence Reference(s)
product MdtF protein nd nd
reactant gadE-mdtEF_mRNA RNA nd nd
gadW_mRNA GadW
Name: gadW_mRNA -> GadW
Description: Translation of GadW
Type: translation
Pathway Components: gadW_mRNA -> GadW
Components:
Function Name Type Evidence Reference(s)
product GadW protein nd nd
reactant gadW_mRNA RNA nd nd
slp-dctR_mRNA Slp
Name: slp-dctR_mRNA -> Slp
Description: Translation of Slp
Type: translation
Pathway Components: slp-dctR_mRNA -> Slp
Components:
Function Name Type Evidence Reference(s)
product Slp protein nd nd
reactant slp-dctR_mRNA RNA nd nd
slp-dctR_mRNA DctR
Name: slp-dctR_mRNA -> DctR
Description: Translation of DctR
Type: translation
Pathway Components: slp-dctR_mRNA -> DctR
Components:
Function Name Type Evidence Reference(s)
product DctR protein nd nd
reactant slp-dctR_mRNA RNA nd nd
hyaABCDEF_mRNA HyaA
Name: hyaABCDEF_mRNA -> HyaA
Description: Translation of HyaA
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaA
Components:
Function Name Type Evidence Reference(s)
product HyaA protein nd nd
reactant hyaABCDEF_mRNA RNA nd nd
HyaC + HyaB + HyaA HyaA-HyaB-HyaC
Name: HyaC + HyaB + HyaA -> HyaA-HyaB-HyaC
Description: Reaction transforming HyaC, HyaB, HyaA into HyaA-HyaB-HyaC
Type: state transition
Pathway Components: HyaC + HyaB + HyaA -> HyaA-HyaB-HyaC
Components:
Function Name Type Evidence Reference(s)
reactant HyaA protein nd nd
product HyaA-HyaB-HyaC complex nd nd
reactant HyaB protein nd nd
reactant HyaC protein nd nd
hyaABCDEF_mRNA HyaB
Name: hyaABCDEF_mRNA -> HyaB
Description: Translation of HyaB
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaB
Components:
Function Name Type Evidence Reference(s)
product HyaB protein nd nd
reactant hyaABCDEF_mRNA RNA nd nd
hyaABCDEF_mRNA HyaC
Name: hyaABCDEF_mRNA -> HyaC
Description: Translation of HyaC
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaC
Components:
Function Name Type Evidence Reference(s)
product HyaC protein nd nd
reactant hyaABCDEF_mRNA RNA nd nd
hyaABCDEF_mRNA HyaD
Name: hyaABCDEF_mRNA -> HyaD
Description: Translation of HyaD
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaD
Components:
Function Name Type Evidence Reference(s)
product HyaD protein nd nd
reactant hyaABCDEF_mRNA RNA nd nd
hyaABCDEF_mRNA HyaE
Name: hyaABCDEF_mRNA -> HyaE
Description: Translation of HyaE
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaE
Components:
Function Name Type Evidence Reference(s)
product HyaE protein nd nd
reactant hyaABCDEF_mRNA RNA nd nd
hyaABCDEF_mRNA HyaF
Name: hyaABCDEF_mRNA -> HyaF
Description: Translation of HyaF
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaF
Components:
Function Name Type Evidence Reference(s)
product HyaF protein nd nd
reactant hyaABCDEF_mRNA RNA nd nd



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