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YdeO Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
GadE MdtE MdtF SafA TolC YdeO a drug a drug_Ext gadE gadE-mdtEF gadE-mdtEF_mRNA gadE_mRNA safA-ydeO safA-ydeO_mRNA TolC MdtE MdtF


Gensor Unit       
Name: YdeO
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0016020 - membrane
GO:0005887 - integral component of plasma membrane
GO:0055085 - transmembrane transport
GO:0046677 - response to antibiotic
GO:0003677 - DNA binding
GO:0006855 - drug transmembrane transport
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
GO:0006351 - transcription, DNA-templated
GO:0043565 - sequence-specific DNA binding
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Components:
Function Name Type
RNA safA-ydeO_mRNA RNA


Reactions       
Showing 10 reactions
gadE gadE_mRNA
Name: gadE -> gadE_mRNA
Description: Transcription of transcription unit gadE; reaction activation by GadE.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant gadE gene nd nd
product gadE_mRNA RNA nd nd
gadE-mdtEF gadE-mdtEF_mRNA
Name: gadE-mdtEF -> gadE-mdtEF_mRNA
Description: Transcription of transcription unit gadE-mdtEF; reaction activation by EvgA-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant gadE-mdtEF gene nd nd
product gadE-mdtEF_mRNA RNA nd nd
safA-ydeO safA-ydeO_mRNA
Name: safA-ydeO -> safA-ydeO_mRNA
Description: Transcription of transcription unit safA-ydeO; reaction activation by EvgA-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant safA-ydeO gene nd nd
product safA-ydeO_mRNA RNA nd nd
gadE-mdtEF_mRNA MdtE
Name: gadE-mdtEF_mRNA -> MdtE
Description: Translation of MdtE
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gadE-mdtEF_mRNA RNA nd nd
product MdtE protein nd nd
TolC + MdtE + MdtF TolC-MdtE-MdtF
Name: TolC + MdtE + MdtF -> TolC-MdtE-MdtF
Description: Reaction transforming TolC, MdtE, MdtF into TolC-MdtE-MdtF
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product TolC-MdtE-MdtF complex nd nd
reactant MdtF protein nd nd
reactant TolC protein nd nd
reactant MdtE protein nd nd
a drug_Ext a drug
Name: a drug_Ext -> a drug
Description: Transport of a drug_Ext through a bacterial membrane, leading to the presence of a drug inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant a drug_Ext simple molecule nd nd
product a drug simple molecule nd nd
gadE-mdtEF_mRNA MdtF
Name: gadE-mdtEF_mRNA -> MdtF
Description: Translation of MdtF
Type: translation
Components:
Function Name Type Evidence Reference(s)
product MdtF protein nd nd
reactant gadE-mdtEF_mRNA RNA nd nd
safA-ydeO_mRNA YdeO
Name: safA-ydeO_mRNA -> YdeO
Description: Translation of YdeO
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant safA-ydeO_mRNA RNA nd nd
product YdeO protein nd nd
gadE-mdtEF_mRNA GadE
Name: gadE-mdtEF_mRNA -> GadE
Description: Translation of GadE
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gadE-mdtEF_mRNA RNA nd nd
product GadE protein nd nd
safA-ydeO_mRNA SafA
Name: safA-ydeO_mRNA -> SafA
Description: Translation of SafA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant safA-ydeO_mRNA RNA nd nd
product SafA protein nd nd



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