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UidR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
D-glucopyranuronate UidA UidB UidC UidR a D-glucoronoside a D-glucoronoside_Ext a glucuronide ROH uidABC uidABC_mRNA uidR uidR_mRNA


Gensor Unit       
Name: UidR
Classification:
Groups: GUs related to carbon source utilization
Gene Ontology Terms (GO): GO:0005975 - carbohydrate metabolic process
GO:0008643 - carbohydrate transport
GO:0019391 - glucuronoside catabolic process
GO:0006811 - ion transport
GO:0008152 - metabolic process
GO:0006355 - regulation of transcription, DNA-templated
GO:0006814 - sodium ion transport
GO:0006351 - transcription, DNA-templated
GO:0006810 - transport
GO:0009279 - cell outer membrane
GO:0016021 - integral component of membrane
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Components:
Function Name Type
RNA uidR_mRNA RNA


Reactions       
Showing 8 reactions
uidABC uidABC_mRNA
Name: uidABC -> uidABC_mRNA
Description: Transcription of transcription unit uidABC; reaction inhibition by UidR.
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant uidABC gene nd nd
product uidABC_mRNA RNA nd nd
uidR uidR_mRNA
Name: uidR -> uidR_mRNA
Description: Transcription of transcription unit uidR; reaction inhibition by UidR.
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant uidR gene nd nd
product uidR_mRNA RNA nd nd
uidABC_mRNA UidB
Name: uidABC_mRNA -> UidB
Description: Translation of UidB
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product UidB protein nd nd
reactant uidABC_mRNA RNA nd nd
a D-glucoronoside_Ext a D-glucoronoside
Name: a D-glucoronoside_Ext -> a D-glucoronoside
Description: Transport of a D-glucoronoside_Ext through a bacterial membrane, leading to the presence of a D-glucoronoside inside the compartment.
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a D-glucoronoside simple molecule nd nd
reactant a D-glucoronoside_Ext simple molecule nd nd
uidABC_mRNA UidA
Name: uidABC_mRNA -> UidA
Description: Translation of UidA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product UidA protein nd nd
reactant uidABC_mRNA RNA nd nd
a glucuronide D-glucopyranuronate + ROH
Name: a glucuronide -> D-glucopyranuronate + ROH
Description: Reaction transforming a glucuronide into D-glucopyranuronate, ROH
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product D-glucopyranuronate simple molecule nd nd
product ROH simple molecule nd nd
reactant a glucuronide simple molecule nd nd
uidABC_mRNA UidC
Name: uidABC_mRNA -> UidC
Description: Translation of UidC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product UidC protein nd nd
reactant uidABC_mRNA RNA nd nd
uidR_mRNA UidR
Name: uidR_mRNA -> UidR
Description: Translation of UidR
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product UidR protein nd nd
reactant uidR_mRNA RNA nd nd



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