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TorR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
GABA CO2 GadA GadX HdeA HdeB L-cysteine L-glutamate L-tryptophan L-tryptophan_Ext phosphate TnaA TnaB TnaC TorA TorC TorD TorI TorR YhiD a menaquinol menaquinone ammonia gadAX gadAX_mRNA hdeAB-yhiD hdeAB-yhiD_mRNA sulfide indole pyruvate tnaC tnaCAB tnaCAB_mRNA tnaC_mRNA torCAD torCAD_mRNA torR torR_mRNA (CH3)3NH TMAO TorR phosphate TorR TorI TorC TorA


Gensor Unit       
Name: TorR
Classification:
Groups: GUs related to the two-component system
Gene Ontology Terms (GO): GO:0071468 - cellular response to acidic pH
GO:0042277 - peptide binding
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0016491 - oxidoreductase activity
GO:0051082 - unfolded protein binding
GO:0016020 - membrane
GO:0003824 - catalytic activity
GO:0009033 - trimethylamine-N-oxide reductase activity
GO:0009276 - Gram-negative-bacterium-type cell wall
GO:0005887 - integral component of plasma membrane
GO:0042597 - periplasmic space
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Components:
Function Name Type
simple molecule TMAO simple molecule


Reactions       
Showing 27 reactions
TorR + phosphate TorR-Phosphorylated
Name: TorR + phosphate -> TorR-Phosphorylated
Description: Reaction transforming TorR, phosphate into TorR-Phosphorylated
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant phosphate simple molecule nd nd
product TorR-Phosphorylated complex nd nd
reactant TorR protein nd nd
tnaC tnaC_mRNA
Name: tnaC -> tnaC_mRNA
Description: Transcription of transcription unit tnaC; reaction activation by TorR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant tnaC gene nd nd
product tnaC_mRNA RNA nd nd
tnaCAB tnaCAB_mRNA
Name: tnaCAB -> tnaCAB_mRNA
Description: Transcription of transcription unit tnaCAB; reaction activation by TorR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant tnaCAB gene nd nd
product tnaCAB_mRNA RNA nd nd
torCAD torCAD_mRNA
Name: torCAD -> torCAD_mRNA
Description: Transcription of transcription unit torCAD; reaction inhibition by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant torCAD gene nd nd
product torCAD_mRNA RNA nd nd
torR torR_mRNA
Name: torR -> torR_mRNA
Description: Transcription of transcription unit torR; reaction inhibition by TorR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product torR_mRNA RNA nd nd
reactant torR gene nd nd
TorR + TorI TorR-TorI
Name: TorR + TorI -> TorR-TorI
Description: Reaction transforming TorR, TorI into TorR-TorI
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product TorR-TorI complex nd nd
reactant TorR protein nd nd
reactant TorI protein nd nd
gadAX gadAX_mRNA
Name: gadAX -> gadAX_mRNA
Description: Transcription of transcription unit gadAX; reaction activation by AdiY.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant gadAX gene nd nd
product gadAX_mRNA RNA nd nd
hdeAB-yhiD hdeAB-yhiD_mRNA
Name: hdeAB-yhiD -> hdeAB-yhiD_mRNA
Description: Transcription of transcription unit hdeAB-yhiD; reaction inhibition by FliZ.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product hdeAB-yhiD_mRNA RNA nd nd
reactant hdeAB-yhiD gene nd nd
tnaCAB_mRNA TnaB
Name: tnaCAB_mRNA -> TnaB
Description: Translation of TnaB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product TnaB protein nd nd
reactant tnaCAB_mRNA RNA nd nd
L-tryptophan_Ext L-tryptophan
Name: L-tryptophan_Ext -> L-tryptophan
Description: Transport of L-tryptophan_Ext through a bacterial membrane, leading to the presence of L-tryptophan inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant L-tryptophan_Ext simple molecule nd nd
product L-tryptophan simple molecule nd nd
torCAD_mRNA TorC
Name: torCAD_mRNA -> TorC
Description: Translation of TorC
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant torCAD_mRNA RNA nd nd
product TorC protein nd nd
TorC + TorA TorC-TorA
Name: TorC + TorA -> TorC-TorA
Description: Reaction transforming TorC, TorA into TorC-TorA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product TorC-TorA complex nd nd
reactant TorA protein nd nd
reactant TorC protein nd nd
a menaquinol + TMAO menaquinone + (CH3)3NH
Name: a menaquinol + TMAO -> menaquinone + (CH3)3NH
Description: Reaction transforming a menaquinol, TMAO into menaquinone, (CH3)3NH
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product menaquinone simple molecule nd nd
reactant a menaquinol simple molecule nd nd
reactant TMAO simple molecule nd nd
product (CH3)3NH simple molecule nd nd
tnaCAB_mRNA TnaA
Name: tnaCAB_mRNA -> TnaA
Description: Translation of TnaA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant tnaCAB_mRNA RNA nd nd
product TnaA protein nd nd
L-tryptophan indole + pyruvate + ammonia
Name: L-tryptophan -> indole + pyruvate + ammonia
Description: Reaction transforming L-tryptophan into indole, pyruvate , ammonia
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant L-tryptophan simple molecule nd nd
product ammonia simple molecule nd nd
product pyruvate simple molecule nd nd
product indole simple molecule nd nd
L-cysteine pyruvate + ammonia + sulfide
Name: L-cysteine -> pyruvate + ammonia + sulfide
Description: Reaction transforming L-cysteine into pyruvate, ammonia , sulfide
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product pyruvate simple molecule nd nd
product ammonia simple molecule nd nd
product sulfide simple molecule nd nd
reactant L-cysteine simple molecule nd nd
torCAD_mRNA TorA
Name: torCAD_mRNA -> TorA
Description: Translation of TorA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant torCAD_mRNA RNA nd nd
product TorA protein nd nd
gadAX_mRNA GadX
Name: gadAX_mRNA -> GadX
Description: Translation of GadX
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gadAX_mRNA RNA nd nd
product GadX protein nd nd
hdeAB-yhiD_mRNA HdeB
Name: hdeAB-yhiD_mRNA -> HdeB
Description: Translation of HdeB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant hdeAB-yhiD_mRNA RNA nd nd
product HdeB protein nd nd
torR_mRNA TorR
Name: torR_mRNA -> TorR
Description: Translation of TorR
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant torR_mRNA RNA nd nd
product TorR protein nd nd
hdeAB-yhiD_mRNA HdeA
Name: hdeAB-yhiD_mRNA -> HdeA
Description: Translation of HdeA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product HdeA protein nd nd
reactant hdeAB-yhiD_mRNA RNA nd nd
tnaCAB_mRNA TnaC
Name: tnaCAB_mRNA -> TnaC
Description: Translation of TnaC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product TnaC protein nd nd
reactant tnaCAB_mRNA RNA nd nd
hdeAB-yhiD_mRNA YhiD
Name: hdeAB-yhiD_mRNA -> YhiD
Description: Translation of YhiD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant hdeAB-yhiD_mRNA RNA nd nd
product YhiD protein nd nd
gadAX_mRNA GadA
Name: gadAX_mRNA -> GadA
Description: Translation of GadA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gadAX_mRNA RNA nd nd
product GadA protein nd nd
L-glutamate CO2 + GABA
Name: L-glutamate -> CO2 + GABA
Description: Reaction transforming L-glutamate into CO2, GABA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product CO2 simple molecule nd nd
product GABA simple molecule nd nd
reactant L-glutamate simple molecule nd nd
torCAD_mRNA TorD
Name: torCAD_mRNA -> TorD
Description: Translation of TorD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant torCAD_mRNA RNA nd nd
product TorD protein nd nd
tnaC_mRNA TnaC
Name: tnaC_mRNA -> TnaC
Description: Transformation of tnaC_mRNA into TnaC by one, or two/three reactions not shown.
Type: super-reaction
Components:
Function Name Type Evidence Reference(s)
product TnaC protein nd nd
reactant tnaC_mRNA RNA nd nd



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