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SoxR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
L-malate FumC SoxR SoxS [2Fe-2S]2+ This Gensor Unit is not yet available This Gensor Unit is not yet available fumarate soxR soxR_mRNA soxS soxS_mRNA SoxR [2Fe-2S]2+


Gensor Unit       
Name: SoxR
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0000986 - bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0006099 - tricarboxylic acid cycle
GO:0003824 - catalytic activity
GO:0001108 - bacterial-type RNA polymerase holo enzyme binding
GO:0006106 - fumarate metabolic process
GO:0004333 - fumarate hydratase activity
GO:0051537 - 2 iron, 2 sulfur cluster binding
GO:0016829 - lyase activity
GO:0006979 - response to oxidative stress
GO:0005737 - cytoplasm
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Components:
Function Name Type
RNA soxS_mRNA RNA


Reactions       
Showing 8 reactions
fumC fumC_mRNA
Name: fumC -> fumC_mRNA
Description: Transcription of transcription unit fumC; reaction inhibition by Fur-Fe(II).
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fumC_mRNA RNA nd nd
reactant fumC gene nd nd
soxR soxR_mRNA
Name: soxR -> soxR_mRNA
Description: Transcription of transcription unit soxR; reaction inhibition by Fur-Fe(II).
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant soxR gene nd nd
product soxR_mRNA RNA nd nd
soxS soxS_mRNA
Name: soxS -> soxS_mRNA
Description: Transcription of transcription unit soxS; reaction inhibition by Fur-Fe(II).
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant soxS gene nd nd
product soxS_mRNA RNA nd nd
SoxR + [2Fe-2S]2+ SoxR-[2Fe-2S]2+
Name: SoxR + [2Fe-2S]2+ -> SoxR-[2Fe-2S]2+
Description: Reaction transforming SoxR, [2Fe-2S]2+ into SoxR-[2Fe-2S]2+
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant SoxR protein nd nd
product SoxR-[2Fe-2S]2+ complex nd nd
reactant [2Fe-2S]2+ simple molecule nd nd
soxR_mRNA SoxR
Name: soxR_mRNA -> SoxR
Description: Translation of SoxR
Type: translation
Components:
Function Name Type Evidence Reference(s)
product SoxR protein nd nd
reactant soxR_mRNA RNA nd nd
fumC_mRNA FumC
Name: fumC_mRNA -> FumC
Description: Translation of FumC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FumC protein nd nd
reactant fumC_mRNA RNA nd nd
L-malate fumarate
Name: L-malate -> fumarate
Description: Reaction transforming L-malate into fumarate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product fumarate simple molecule nd nd
reactant L-malate simple molecule nd nd
soxS_mRNA SoxS
Name: soxS_mRNA -> SoxS
Description: Translation of SoxS
Type: translation
Components:
Function Name Type Evidence Reference(s)
product SoxS protein nd nd
reactant soxS_mRNA RNA nd nd



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