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SoxS Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
L-malate DARP 5,6,7,8-tetrahydropteridine 6,7-dihydropteridine 6-phosphogluconolactone AP site removed from DNA AcnA AcrA AcrB AcrD AcrE AcrF AcrZ CMP CMP-3-deoxy-D-manno-octulosonate CO2 Crr D-fructose 6-phosphate I-CIT EmrA EmrB EmrK EmrY EntS FldA FldB Fpr FumC Fur GTP InaA KDOIII-lipopolysaccharide L-glutamate MacA MacB MarA MarB MarR MdtA MdtB MdtC MdtE MdtF This Gensor Unit is not yet available Nfo NfsA NfsB Pgi PoxB PqiA PqiB PtsG RibA RimK Rob SodA SoxS TolC Uof WaaY WaaZ YbjC YbjN YgiA YgiB YgiC ZinT Zwf a [protein] alpha;-L-glu-alpha-L-glu a [protein] alpha-L-glutamate a drug a drug_Ext LPS a macrolide antibiotic a macrolide antibiotic_Ext a reduced flavodoxin a reduced nitroaromatic compound acetaldehyde acetate acetoin acnA acnA_mRNA acrAB acrAB_mRNA acrZ acrZ_mRNA an AP(apurinic or apyrimidinic) site created by glycosylic bond cleavage an oxidized flavodoxin an oxidized nitroaromatic compound an ubiquinol ubiquinone beta-D-glucose-6-P beta-glucose_Ext cis-aconitate cit PP enterobactin enterobactin_Ext fldA-uof-fur fldA-uof-fur_mRNA fldB fldB_mRNA formate fpr fpr_mRNA This Gensor Unit is not yet available This Gensor Unit is not yet available fumarate glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate perhydrol inaA inaA_mRNA marRAB marRAB_mRNA methyl beta-D-glucoside 6-phosphate b-methyl-D-glucoside_Ext micF micF_mRNA nfo nfo_mRNA nfsB nfsB_mRNA oxygen pgi pgi_mRNA phosphate PEP_Ext poxB poxB_mRNA pqiAB pqiAB_mRNA ptsG ptsG_mRNA pyruvate ribA ribA_mRNA rob rob_mRNA sodA sodA_mRNA soxS soxS_mRNA superoxide tolC-ygiABC tolC-ygiABC_mRNA uof-fur uof-fur_mRNA This Gensor Unit is not yet available This Gensor Unit is not yet available ybjC-nfsA-rimK-ybjN ybjC-nfsA-rimK-ybjN_mRNA zinT zinT_mRNA zwf zwf_mRNA AcrA TolC AcrB AcrD AcrA TolC PtsG Crr TolC MacB MacA TolC MdtE MdtF AcrE AcrF TolC EmrA EmrB TolC EmrK EmrY TolC EntS TolC TolC MdtC MdtB MdtA oxalacetate


Gensor Unit       
Name: SoxS
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0045892 - negative regulation of transcription, DNA-templated
GO:0008270 - zinc ion binding
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0003824 - catalytic activity
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system
GO:0004324 - ferredoxin-NADP+ reductase activity
GO:0000986 - bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding
GO:0005622 - intracellular
GO:0004347 - glucose-6-phosphate isomerase activity
GO:0006094 - gluconeogenesis
GO:0006099 - tricarboxylic acid cycle
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Components:
Function Name Type
simple molecule oxalacetate simple molecule


Reactions       
Showing 97 reactions
acnA acnA_mRNA
Name: acnA -> acnA_mRNA
Description: Transcription of transcription unit acnA; reaction activation by Cra.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product acnA_mRNA RNA nd nd
reactant acnA gene nd nd
acrAB acrAB_mRNA
Name: acrAB -> acrAB_mRNA
Description: Transcription of transcription unit acrAB; reaction inhibition by AcrR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant acrAB gene nd nd
product acrAB_mRNA RNA nd nd
acrZ acrZ_mRNA
Name: acrZ -> acrZ_mRNA
Description: Transcription of transcription unit acrZ; reaction activation by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product acrZ_mRNA RNA nd nd
reactant acrZ gene nd nd
fldA-uof-fur fldA-uof-fur_mRNA
Name: fldA-uof-fur -> fldA-uof-fur_mRNA
Description: Transcription of transcription unit fldA-uof-fur; reaction activation by SoxS.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant fldA-uof-fur gene nd nd
product fldA-uof-fur_mRNA RNA nd nd
fldB fldB_mRNA
Name: fldB -> fldB_mRNA
Description: Transcription of transcription unit fldB; reaction activation by SoxS.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fldB_mRNA RNA nd nd
reactant fldB gene nd nd
fpr fpr_mRNA
Name: fpr -> fpr_mRNA
Description: Transcription of transcription unit fpr; reaction activation by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant fpr gene nd nd
product fpr_mRNA RNA nd nd
fumC fumC_mRNA
Name: fumC -> fumC_mRNA
Description: Transcription of transcription unit fumC; reaction inhibition by Fur-Fe(II).
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fumC_mRNA RNA nd nd
reactant fumC gene nd nd
inaA inaA_mRNA
Name: inaA -> inaA_mRNA
Description: Transcription of transcription unit inaA; reaction activation by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant inaA gene nd nd
product inaA_mRNA RNA nd nd
marRAB marRAB_mRNA
Name: marRAB -> marRAB_mRNA
Description: Transcription of transcription unit marRAB; reaction inhibition by Cra.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant marRAB gene nd nd
product marRAB_mRNA RNA nd nd
micF micF_mRNA
Name: micF -> micF_mRNA
Description: Transcription of transcription unit micF; reaction activation by HU.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product micF_mRNA RNA nd nd
reactant micF gene nd nd
nfo nfo_mRNA
Name: nfo -> nfo_mRNA
Description: Transcription of transcription unit nfo; reaction activation by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product nfo_mRNA RNA nd nd
reactant nfo gene nd nd
nfsB nfsB_mRNA
Name: nfsB -> nfsB_mRNA
Description: Transcription of transcription unit nfsB; reaction activation by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant nfsB gene nd nd
product nfsB_mRNA RNA nd nd
pgi pgi_mRNA
Name: pgi -> pgi_mRNA
Description: Transcription of transcription unit pgi; reaction activation by SoxS.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product pgi_mRNA RNA nd nd
reactant pgi gene nd nd
poxB poxB_mRNA
Name: poxB -> poxB_mRNA
Description: Transcription of transcription unit poxB; reaction activation by Cra.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant poxB gene nd nd
product poxB_mRNA RNA nd nd
pqiAB pqiAB_mRNA
Name: pqiAB -> pqiAB_mRNA
Description: Transcription of transcription unit pqiAB; reaction activation by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant pqiAB gene nd nd
product pqiAB_mRNA RNA nd nd
ptsG ptsG_mRNA
Name: ptsG -> ptsG_mRNA
Description: Transcription of transcription unit ptsG; reaction inhibition by Mlc.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product ptsG_mRNA RNA nd nd
reactant ptsG gene nd nd
ribA ribA_mRNA
Name: ribA -> ribA_mRNA
Description: Transcription of transcription unit ribA; reaction activation by SoxS.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product ribA_mRNA RNA nd nd
reactant ribA gene nd nd
rob rob_mRNA
Name: rob -> rob_mRNA
Description: Transcription of transcription unit rob; reaction inhibition by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product rob_mRNA RNA nd nd
reactant rob gene nd nd
sodA sodA_mRNA
Name: sodA -> sodA_mRNA
Description: Transcription of transcription unit sodA; reaction inhibition by Fur-Fe(II).
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product sodA_mRNA RNA nd nd
reactant sodA gene nd nd
soxS soxS_mRNA
Name: soxS -> soxS_mRNA
Description: Transcription of transcription unit soxS; reaction inhibition by Fur-Fe(II).
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant soxS gene nd nd
product soxS_mRNA RNA nd nd
tolC-ygiABC tolC-ygiABC_mRNA
Name: tolC-ygiABC -> tolC-ygiABC_mRNA
Description: Transcription of transcription unit tolC-ygiABC; reaction activation by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant tolC-ygiABC gene nd nd
product tolC-ygiABC_mRNA RNA nd nd
uof-fur uof-fur_mRNA
Name: uof-fur -> uof-fur_mRNA
Description: Transcription of transcription unit uof-fur; reaction activation by OxyR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant uof-fur gene nd nd
product uof-fur_mRNA RNA nd nd
waaYZ waaYZ_mRNA
Name: waaYZ -> waaYZ_mRNA
Description: Transcription of transcription unit waaYZ; reaction activation by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant waaYZ gene nd nd
product waaYZ_mRNA RNA nd nd
ybjC-nfsA-rimK-ybjN ybjC-nfsA-rimK-ybjN_mRNA
Name: ybjC-nfsA-rimK-ybjN -> ybjC-nfsA-rimK-ybjN_mRNA
Description: Transcription of transcription unit ybjC-nfsA-rimK-ybjN; reaction activation by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant ybjC-nfsA-rimK-ybjN gene nd nd
product ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
zinT zinT_mRNA
Name: zinT -> zinT_mRNA
Description: Transcription of transcription unit zinT; reaction activation by Fur-Fe(II).
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product zinT_mRNA RNA nd nd
reactant zinT gene nd nd
zwf zwf_mRNA
Name: zwf -> zwf_mRNA
Description: Transcription of transcription unit zwf; reaction inhibition by Cra.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product zwf_mRNA RNA nd nd
reactant zwf gene nd nd
marRAB_mRNA MarA
Name: marRAB_mRNA -> MarA
Description: Translation of MarA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product MarA protein nd nd
reactant marRAB_mRNA RNA nd nd
acrAB_mRNA AcrA
Name: acrAB_mRNA -> AcrA
Description: Translation of AcrA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant acrAB_mRNA RNA nd nd
product AcrA protein nd nd
AcrA + TolC + AcrB AcrA-TolC-AcrB
Name: AcrA + TolC + AcrB -> AcrA-TolC-AcrB
Description: Reaction transforming AcrA, TolC, AcrB into AcrA-TolC-AcrB
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product AcrA-TolC-AcrB complex nd nd
reactant AcrB protein nd nd
reactant AcrA protein nd nd
reactant TolC protein nd nd
a drug_Ext a drug
Name: a drug_Ext -> a drug
Description: Transport of a drug_Ext through a bacterial membrane, leading to the presence of a drug inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant a drug_Ext simple molecule nd nd
product a drug simple molecule nd nd
AcrD + AcrA + TolC AcrD-AcrA-TolC
Name: AcrD + AcrA + TolC -> AcrD-AcrA-TolC
Description: Reaction transforming AcrD, AcrA, TolC into AcrD-AcrA-TolC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant AcrA protein nd nd
reactant TolC protein nd nd
reactant AcrD protein nd nd
product AcrD-AcrA-TolC complex nd nd
nfo_mRNA Nfo
Name: nfo_mRNA -> Nfo
Description: Translation of Nfo
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant nfo_mRNA RNA nd nd
product Nfo protein nd nd
an AP(apurinic or apyrimidinic) site created by glycosylic bond cleavage AP site removed from DNA
Name: an AP(apurinic or apyrimidinic) site created by glycosylic bond cleavage -> AP site removed from DNA
Description: Reaction transforming an AP(apurinic or apyrimidinic) site created by glycosylic bond cleavage into AP site removed from DNA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product AP site removed from DNA simple molecule nd nd
reactant an AP(apurinic or apyrimidinic) site created by glycosylic bond cleavage simple molecule nd nd
zwf_mRNA Zwf
Name: zwf_mRNA -> Zwf
Description: Translation of Zwf
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant zwf_mRNA RNA nd nd
product Zwf protein nd nd
beta-D-glucose-6-P 6-phosphogluconolactone
Name: beta-D-glucose-6-P -> 6-phosphogluconolactone
Description: Reaction transforming beta-D-glucose-6-P into 6-phosphogluconolactone
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant beta-D-glucose-6-P simple molecule nd nd
product 6-phosphogluconolactone simple molecule nd nd
ptsG_mRNA PtsG
Name: ptsG_mRNA -> PtsG
Description: Translation of PtsG
Type: translation
Components:
Function Name Type Evidence Reference(s)
product PtsG protein nd nd
reactant ptsG_mRNA RNA nd nd
PtsG + Crr PtsG-Crr
Name: PtsG + Crr -> PtsG-Crr
Description: Reaction transforming PtsG, Crr into PtsG-Crr
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant PtsG protein nd nd
product PtsG-Crr complex nd nd
reactant Crr protein nd nd
b-methyl-D-glucoside_Ext + PEP_Ext methyl beta-D-glucoside 6-phosphate + pyruvate
Name: b-methyl-D-glucoside_Ext + PEP_Ext -> methyl beta-D-glucoside 6-phosphate + pyruvate
Description: Transport of b-methyl-D-glucoside_Ext, PEP_Ext through a bacterial membrane, leading to the presence of methyl beta-D-glucoside 6-phosphate, pyruvate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product methyl beta-D-glucoside 6-phosphate simple molecule nd nd
reactant b-methyl-D-glucoside_Ext simple molecule nd nd
reactant PEP_Ext simple molecule nd nd
product pyruvate simple molecule nd nd
PEP_Ext + beta-glucose_Ext beta-D-glucose-6-P + pyruvate
Name: PEP_Ext + beta-glucose_Ext -> beta-D-glucose-6-P + pyruvate
Description: Transport of PEP_Ext, beta-glucose_Ext through a bacterial membrane, leading to the presence of beta-D-glucose-6-P, pyruvate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant PEP_Ext simple molecule nd nd
reactant beta-glucose_Ext simple molecule nd nd
product pyruvate simple molecule nd nd
product beta-D-glucose-6-P simple molecule nd nd
waaYZ_mRNA WaaY
Name: waaYZ_mRNA -> WaaY
Description: Translation of WaaY
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant waaYZ_mRNA RNA nd nd
product WaaY protein nd nd
glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
Name: glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate -> glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
Description: Reaction transforming glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate into glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate simple molecule nd nd
reactant glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate simple molecule nd nd
ybjC-nfsA-rimK-ybjN_mRNA NfsA
Name: ybjC-nfsA-rimK-ybjN_mRNA -> NfsA
Description: Translation of NfsA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product NfsA protein nd nd
reactant ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
an oxidized nitroaromatic compound a reduced nitroaromatic compound
Name: an oxidized nitroaromatic compound -> a reduced nitroaromatic compound
Description: Reaction transforming an oxidized nitroaromatic compound into a reduced nitroaromatic compound
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant an oxidized nitroaromatic compound simple molecule nd nd
product a reduced nitroaromatic compound simple molecule nd nd
inaA_mRNA InaA
Name: inaA_mRNA -> InaA
Description: Translation of InaA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product InaA protein nd nd
reactant inaA_mRNA RNA nd nd
acrZ_mRNA AcrZ
Name: acrZ_mRNA -> AcrZ
Description: Translation of AcrZ
Type: translation
Components:
Function Name Type Evidence Reference(s)
product AcrZ protein nd nd
reactant acrZ_mRNA RNA nd nd
marRAB_mRNA MarR
Name: marRAB_mRNA -> MarR
Description: Translation of MarR
Type: translation
Components:
Function Name Type Evidence Reference(s)
product MarR protein nd nd
reactant marRAB_mRNA RNA nd nd
tolC-ygiABC_mRNA TolC
Name: tolC-ygiABC_mRNA -> TolC
Description: Translation of TolC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product TolC protein nd nd
reactant tolC-ygiABC_mRNA RNA nd nd
TolC + MacB + MacA TolC-MacB-MacA
Name: TolC + MacB + MacA -> TolC-MacB-MacA
Description: Reaction transforming TolC, MacB, MacA into TolC-MacB-MacA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant MacA protein nd nd
reactant MacB protein nd nd
product TolC-MacB-MacA complex nd nd
reactant TolC protein nd nd
a macrolide antibiotic_Ext a macrolide antibiotic + phosphate
Name: a macrolide antibiotic_Ext -> a macrolide antibiotic + phosphate
Description: Transport of a macrolide antibiotic_Ext through a bacterial membrane, leading to the presence of a macrolide antibiotic, phosphate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product phosphate simple molecule nd nd
product a macrolide antibiotic simple molecule nd nd
reactant a macrolide antibiotic_Ext simple molecule nd nd
TolC + MdtE + MdtF TolC-MdtE-MdtF
Name: TolC + MdtE + MdtF -> TolC-MdtE-MdtF
Description: Reaction transforming TolC, MdtE, MdtF into TolC-MdtE-MdtF
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product TolC-MdtE-MdtF complex nd nd
reactant MdtF protein nd nd
reactant TolC protein nd nd
reactant MdtE protein nd nd
AcrE + AcrF + TolC AcrE-AcrF-TolC
Name: AcrE + AcrF + TolC -> AcrE-AcrF-TolC
Description: Reaction transforming AcrE, AcrF, TolC into AcrE-AcrF-TolC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product AcrE-AcrF-TolC complex nd nd
reactant AcrE protein nd nd
reactant TolC protein nd nd
reactant AcrF protein nd nd
EmrA + EmrB + TolC EmrA-EmrB-TolC
Name: EmrA + EmrB + TolC -> EmrA-EmrB-TolC
Description: Reaction transforming EmrA, EmrB, TolC into EmrA-EmrB-TolC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant EmrB protein nd nd
product EmrA-EmrB-TolC complex nd nd
reactant TolC protein nd nd
reactant EmrA protein nd nd
EmrK + EmrY + TolC EmrK-EmrY-TolC
Name: EmrK + EmrY + TolC -> EmrK-EmrY-TolC
Description: Reaction transforming EmrK, EmrY, TolC into EmrK-EmrY-TolC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product EmrK-EmrY-TolC complex nd nd
reactant EmrY protein nd nd
reactant EmrK protein nd nd
reactant TolC protein nd nd
EntS + TolC EntS-TolC
Name: EntS + TolC -> EntS-TolC
Description: Reaction transforming EntS, TolC into EntS-TolC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant TolC protein nd nd
reactant EntS protein nd nd
product EntS-TolC complex nd nd
enterobactin_Ext enterobactin
Name: enterobactin_Ext -> enterobactin
Description: Transport of enterobactin_Ext through a bacterial membrane, leading to the presence of enterobactin inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant enterobactin_Ext simple molecule nd nd
product enterobactin simple molecule nd nd
TolC + MdtC + MdtB + MdtA TolC-MdtC-MdtB-MdtA
Name: TolC + MdtC + MdtB + MdtA -> TolC-MdtC-MdtB-MdtA
Description: Reaction transforming TolC, MdtC, MdtB, MdtA into TolC-MdtC-MdtB-MdtA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant MdtB protein nd nd
reactant TolC protein nd nd
product TolC-MdtC-MdtB-MdtA complex nd nd
reactant MdtC protein nd nd
reactant MdtA protein nd nd
sodA_mRNA SodA
Name: sodA_mRNA -> SodA
Description: Translation of SodA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant sodA_mRNA RNA nd nd
product SodA protein nd nd
superoxide perhydrol + oxygen
Name: superoxide -> perhydrol + oxygen
Description: Reaction transforming superoxide into perhydrol, oxygen
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product oxygen simple molecule nd nd
reactant superoxide simple molecule nd nd
product perhydrol simple molecule nd nd
uof-fur_mRNA Fur
Name: uof-fur_mRNA -> Fur
Description: Translation of Fur
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant uof-fur_mRNA RNA nd nd
product Fur protein nd nd
ybjC-nfsA-rimK-ybjN_mRNA YbjN
Name: ybjC-nfsA-rimK-ybjN_mRNA -> YbjN
Description: Translation of YbjN
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YbjN protein nd nd
reactant ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
pgi_mRNA Pgi
Name: pgi_mRNA -> Pgi
Description: Translation of Pgi
Type: translation
Components:
Function Name Type Evidence Reference(s)
product Pgi protein nd nd
reactant pgi_mRNA RNA nd nd
beta-D-glucose-6-P D-fructose 6-phosphate
Name: beta-D-glucose-6-P -> D-fructose 6-phosphate
Description: Reaction transforming beta-D-glucose-6-P into D-fructose 6-phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product D-fructose 6-phosphate simple molecule nd nd
reactant beta-D-glucose-6-P simple molecule nd nd
acnA_mRNA AcnA
Name: acnA_mRNA -> AcnA
Description: Translation of AcnA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product AcnA protein nd nd
reactant acnA_mRNA RNA nd nd
cis-aconitate I-CIT
Name: cis-aconitate -> I-CIT
Description: Reaction transforming cis-aconitate into I-CIT
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant cis-aconitate simple molecule nd nd
product I-CIT simple molecule nd nd
cit cis-aconitate
Name: cit -> cis-aconitate
Description: Reaction transforming cit into cis-aconitate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product cis-aconitate simple molecule nd nd
reactant cit simple molecule nd nd
pqiAB_mRNA PqiB
Name: pqiAB_mRNA -> PqiB
Description: Translation of PqiB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product PqiB protein nd nd
reactant pqiAB_mRNA RNA nd nd
acrAB_mRNA AcrB
Name: acrAB_mRNA -> AcrB
Description: Translation of AcrB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant acrAB_mRNA RNA nd nd
product AcrB protein nd nd
poxB_mRNA PoxB
Name: poxB_mRNA -> PoxB
Description: Translation of PoxB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product PoxB protein nd nd
reactant poxB_mRNA RNA nd nd
pyruvate + acetaldehyde acetoin + CO2
Name: pyruvate + acetaldehyde -> acetoin + CO2
Description: Reaction transforming pyruvate, acetaldehyde into acetoin, CO2
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product acetoin simple molecule nd nd
reactant pyruvate simple molecule nd nd
reactant acetaldehyde simple molecule nd nd
product CO2 simple molecule nd nd
pyruvate + ubiquinone CO2 + an ubiquinol + acetate
Name: pyruvate + ubiquinone -> CO2 + an ubiquinol + acetate
Description: Reaction transforming pyruvate, ubiquinone into CO2, an ubiquinol , acetate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product acetate simple molecule nd nd
product CO2 simple molecule nd nd
product an ubiquinol simple molecule nd nd
reactant pyruvate simple molecule nd nd
reactant ubiquinone simple molecule nd nd
fumC_mRNA FumC
Name: fumC_mRNA -> FumC
Description: Translation of FumC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FumC protein nd nd
reactant fumC_mRNA RNA nd nd
L-malate fumarate
Name: L-malate -> fumarate
Description: Reaction transforming L-malate into fumarate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product fumarate simple molecule nd nd
reactant L-malate simple molecule nd nd
tolC-ygiABC_mRNA YgiB
Name: tolC-ygiABC_mRNA -> YgiB
Description: Translation of YgiB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YgiB protein nd nd
reactant tolC-ygiABC_mRNA RNA nd nd
ybjC-nfsA-rimK-ybjN_mRNA YbjC
Name: ybjC-nfsA-rimK-ybjN_mRNA -> YbjC
Description: Translation of YbjC
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
product YbjC protein nd nd
fldB_mRNA FldB
Name: fldB_mRNA -> FldB
Description: Translation of FldB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fldB_mRNA RNA nd nd
product FldB protein nd nd
nfsB_mRNA NfsB
Name: nfsB_mRNA -> NfsB
Description: Translation of NfsB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product NfsB protein nd nd
reactant nfsB_mRNA RNA nd nd
5,6,7,8-tetrahydropteridine 6,7-dihydropteridine
Name: 5,6,7,8-tetrahydropteridine -> 6,7-dihydropteridine
Description: Reaction transforming 5,6,7,8-tetrahydropteridine into 6,7-dihydropteridine