RegulonDB RegulonDB

RstA Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
CsgG trisaccharide_Ext aldonate_Ext TeO2 amino acid hydroxy carboxylate disaccharide_Ext glycoside_Ext N-acetylneuraminate_Ext sulfadiazine nitrite polyol CsgE menaquinol_Ext phosphate CsgA_Ext nucleotide_Ext TolB hydrophilic solute or ion 600 Da nucleoside_Ext maltose inositol amide Asr monocarboxylate_Ext ion chitobiose_Ext chitobiose base(2) 5-methylthioribose_Ext short-chain alcohol disaccharide short-chain acid anion organosulfur compound_Ext oligopeptide polyol_Ext lactone_Ext short-chain acid anion_Ext glycoside glycerol 1-phosphate RstA ubiquinone betaine_Ext ubiquinol_Ext CsgF NarH amide_Ext nitrate_Ext MCFA_Ext aromatic compound monocarboxylate CsgD nucleotide sugar_Ext narGHJI_mRNA asr caprate_Ext enterobactin dicarboxylate_Ext lactone base(2)_Ext ion_Ext beta-Neu5Ac OmpF RstA trisaccharide acceptors sulfadiazine_Ext 5-methylthioribose NarG hydroxy carboxylate_Ext narGHJI inositol_Ext beta-Neu5Ac_Ext NarI CsgE N-acetylneuraminate NarI nucleoside MCFA csgDEFG sugar phosphate_Ext amine_Ext aromatic compound_Ext RCHO_Ext organophosphorus compound_Ext amine short-chain alcohol_Ext sugar phosphate enterobactin_Ext aldonate OmpF oligopeptide_Ext hydrophilic solute or ion 600 Da_Ext organophosphorus compound sugar_Ext glycerol 1-phosphate_Ext dicarboxylate betaine A(H2) sugar csgDEFG_mRNA ompF_mRNA NarJ phosphate Te0 caprate NarH RCHO CsgA nucleotide asr_mRNA maltose_Ext TolB amino acid_Ext CsgG organosulfur compound nucleotide sugar vitamin K2 ompF NarG


Gensor Unit       
Name: RstA
Classification:
Groups: Energy production and conversion
Signal transduction mechanisms
Cell wall/membrane/envelope biogenesis
Gene Ontology Terms (GO): biological_process GO:0019645 - anaerobic electron transport chain
GO:0009061 - anaerobic respiration
GO:0043213 - bacteriocin transport
GO:0022610 - biological adhesion
GO:0051131 - chaperone-mediated protein complex assembly
GO:0006855 - drug transmembrane transport
Read more >
cellular_component GO:0044799 - NarGHI complex
GO:0009279 - cell outer membrane
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0031224 - intrinsic component of membrane
Read more >
molecular_function GO:0051538 - 3 iron, 4 sulfur cluster binding
GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0003677 - DNA binding
GO:0001216 - DNA-binding transcription activator activity
GO:0001217 - DNA-binding transcription repressor activity
GO:0000986 - bacterial-type proximal promoter sequence-specific DNA binding
GO:0042912 - colicin transmembrane transporter activity
Read more >
Components:
  Function Name Type
  simple_molecule 5-methylthioribose simple_molecule
  simple_molecule 5-methylthioribose_Ext simple_molecule
  simple_molecule A(H2) simple_molecule
  protein Asr protein
  simple_molecule CsgA simple_molecule
  simple_molecule CsgA_Ext simple_molecule
  protein CsgD protein
  protein CsgE protein
  complex CsgE-CsgG complex
  protein CsgF protein
  protein CsgG protein
  simple_molecule MCFA simple_molecule
  simple_molecule MCFA_Ext simple_molecule
  simple_molecule N-acetylneuraminate simple_molecule
  simple_molecule N-acetylneuraminate_Ext simple_molecule
  protein NarG protein
  complex NarG-NarH-NarI complex
  protein NarH protein
  protein NarI protein
  protein NarJ protein
  protein OmpF protein
  simple_molecule RCHO simple_molecule
  simple_molecule RCHO_Ext simple_molecule
  protein RstA protein
  complex RstA-phosphate complex
  simple_molecule Te0 simple_molecule
  simple_molecule TeO2 simple_molecule
  protein TolB protein
  complex TolB-OmpF complex
  simple_molecule acceptors simple_molecule
  simple_molecule aldonate simple_molecule
  simple_molecule aldonate_Ext simple_molecule
  simple_molecule amide simple_molecule
  simple_molecule amide_Ext simple_molecule
  simple_molecule amine simple_molecule
  simple_molecule amine_Ext simple_molecule
  simple_molecule amino acid simple_molecule
  simple_molecule amino acid_Ext simple_molecule
  simple_molecule aromatic compound simple_molecule
  simple_molecule aromatic compound_Ext simple_molecule
  gene asr gene
  RNA asr_mRNA RNA
  simple_molecule base(2) simple_molecule
  simple_molecule base(2)_Ext simple_molecule
  simple_molecule beta-Neu5Ac simple_molecule
  simple_molecule beta-Neu5Ac_Ext simple_molecule
  simple_molecule betaine simple_molecule
  simple_molecule betaine_Ext simple_molecule
  simple_molecule caprate simple_molecule
  simple_molecule caprate_Ext simple_molecule
  simple_molecule chitobiose simple_molecule
  simple_molecule chitobiose_Ext simple_molecule
  gene csgDEFG gene
  RNA csgDEFG_mRNA RNA
  simple_molecule dicarboxylate simple_molecule
  simple_molecule dicarboxylate_Ext simple_molecule
  simple_molecule disaccharide simple_molecule
  simple_molecule disaccharide_Ext simple_molecule
  simple_molecule enterobactin simple_molecule
  simple_molecule enterobactin_Ext simple_molecule
  simple_molecule glycerol 1-phosphate simple_molecule
  simple_molecule glycerol 1-phosphate_Ext simple_molecule
  simple_molecule glycoside simple_molecule
  simple_molecule glycoside_Ext simple_molecule
  simple_molecule hydrophilic solute or ion 600 Da simple_molecule
  simple_molecule hydrophilic solute or ion 600 Da_Ext simple_molecule
  simple_molecule hydroxy carboxylate simple_molecule
  simple_molecule hydroxy carboxylate_Ext simple_molecule
  simple_molecule inositol simple_molecule
  simple_molecule inositol_Ext simple_molecule
  simple_molecule ion simple_molecule
  simple_molecule ion_Ext simple_molecule
  simple_molecule lactone simple_molecule
  simple_molecule lactone_Ext simple_molecule
  simple_molecule maltose simple_molecule
  simple_molecule maltose_Ext simple_molecule
  simple_molecule menaquinol_Ext simple_molecule
  simple_molecule monocarboxylate simple_molecule
  simple_molecule monocarboxylate_Ext simple_molecule
  gene narGHJI gene
  RNA narGHJI_mRNA RNA
  simple_molecule nitrate_Ext simple_molecule
  simple_molecule nitrite simple_molecule
  simple_molecule nucleoside simple_molecule
  simple_molecule nucleoside_Ext simple_molecule
  simple_molecule nucleotide simple_molecule
  simple_molecule nucleotide sugar simple_molecule
  simple_molecule nucleotide sugar_Ext simple_molecule
  simple_molecule nucleotide_Ext simple_molecule
  simple_molecule oligopeptide simple_molecule
  simple_molecule oligopeptide_Ext simple_molecule
  gene ompF gene
  RNA ompF_mRNA RNA
  simple_molecule organophosphorus compound simple_molecule
  simple_molecule organophosphorus compound_Ext simple_molecule
  simple_molecule organosulfur compound simple_molecule
  simple_molecule organosulfur compound_Ext simple_molecule
  simple_molecule phosphate simple_molecule
  simple_molecule polyol simple_molecule
  simple_molecule polyol_Ext simple_molecule
  simple_molecule short-chain acid anion simple_molecule
  simple_molecule short-chain acid anion_Ext simple_molecule
  simple_molecule short-chain alcohol simple_molecule
  simple_molecule short-chain alcohol_Ext simple_molecule
  simple_molecule sugar simple_molecule
  simple_molecule sugar phosphate simple_molecule
  simple_molecule sugar phosphate_Ext simple_molecule
  simple_molecule sugar_Ext simple_molecule
  simple_molecule sulfadiazine simple_molecule
  simple_molecule sulfadiazine_Ext simple_molecule
  simple_molecule trisaccharide simple_molecule
  simple_molecule trisaccharide_Ext simple_molecule
  simple_molecule ubiquinol_Ext simple_molecule
  simple_molecule ubiquinone simple_molecule
  simple_molecule vitamin K2 simple_molecule


Reactions       
Showing 61 reactions
phosphate + RstA RstA-phosphate
Name: phosphate + RstA -> RstA-phosphate
Description: Reaction transforming phosphate, RstA into RstA-phosphate
Type: state transition
Pathway Components: phosphate + RstA -> RstA-phosphate
Components:
Function Name Type
reactant RstA protein
product RstA-phosphate complex
reactant phosphate simple_molecule
RstA-phosphate asr asr_mRNA
Name: asr -> asr_mRNA
Description: Transcription of transcription unit asr. Reaction activation by RstA-phosphate.
Type: transcription
Pathway Components: asr - RstA-phosphate -> asr_mRNA
Components:
Function Name Type
activator RstA-phosphate complex
reactant asr gene
product asr_mRNA RNA
RstA-phosphate narGHJI narGHJI_mRNA
Name: narGHJI -> narGHJI_mRNA
Description: Transcription of transcription unit narGHJI. Reaction activation by RstA-phosphate.
Type: transcription
Pathway Components: narGHJI - RstA-phosphate -> narGHJI_mRNA
Components:
Function Name Type
activator RstA-phosphate complex
reactant narGHJI gene
product narGHJI_mRNA RNA
RstA-phosphate csgDEFG csgDEFG_mRNA
Name: csgDEFG -> csgDEFG_mRNA
Description: Transcription of transcription unit csgDEFG. Reaction inhibition by RstA-phosphate.
Type: transcription
Pathway Components: csgDEFG - RstA-phosphate -> csgDEFG_mRNA
Components:
Function Name Type
inhibitor RstA-phosphate complex
reactant csgDEFG gene
product csgDEFG_mRNA RNA
RstA-phosphate ompF ompF_mRNA
Name: ompF -> ompF_mRNA
Description: Transcription of transcription unit ompF. Reaction inhibition by RstA-phosphate.
Type: transcription
Pathway Components: ompF - RstA-phosphate -> ompF_mRNA
Components:
Function Name Type
inhibitor RstA-phosphate complex
reactant ompF gene
product ompF_mRNA RNA
ompF_mRNA OmpF
Name: ompF_mRNA -> OmpF
Description: Translation of OmpF
Type: translation
Pathway Components: ompF_mRNA -> OmpF
Components:
Function Name Type
product OmpF protein
reactant ompF_mRNA RNA
OmpF hydrophilic solute or ion 600 Da_Ext hydrophilic solute or ion 600 Da
Name: hydrophilic solute or ion 600 Da_Ext -> hydrophilic solute or ion 600 Da
Description: Transport of hydrophilic solute or ion 600 Da_Ext through a bacterial membrane, leading to the presence of hydrophilic solute or ion 600 Da inside the cell.
Type: transport
Pathway Components: hydrophilic solute or ion 600 Da_Ext - OmpF -> hydrophilic solute or ion 600 Da
Components:
Function Name Type
catalyzer OmpF protein
product hydrophilic solute or ion 600 Da simple_molecule
reactant hydrophilic solute or ion 600 Da_Ext simple_molecule
OmpF organophosphorus compound_Ext organophosphorus compound
Name: organophosphorus compound_Ext -> organophosphorus compound
Description: Transport of organophosphorus compound_Ext through a bacterial membrane, leading to the presence of organophosphorus compound inside the cell.
Type: transport
Pathway Components: organophosphorus compound_Ext - OmpF -> organophosphorus compound
Components:
Function Name Type
catalyzer OmpF protein
product organophosphorus compound simple_molecule
reactant organophosphorus compound_Ext simple_molecule
OmpF glycoside_Ext glycoside
Name: glycoside_Ext -> glycoside
Description: Transport of glycoside_Ext through a bacterial membrane, leading to the presence of glycoside inside the cell.
Type: transport
Pathway Components: glycoside_Ext - OmpF -> glycoside
Components:
Function Name Type
catalyzer OmpF protein
product glycoside simple_molecule
reactant glycoside_Ext simple_molecule
OmpF sugar_Ext sugar
Name: sugar_Ext -> sugar
Description: Transport of sugar_Ext through a bacterial membrane, leading to the presence of sugar inside the cell.
Type: transport
Pathway Components: sugar_Ext - OmpF -> sugar
Components:
Function Name Type
catalyzer OmpF protein
product sugar simple_molecule
reactant sugar_Ext simple_molecule
OmpF beta-Neu5Ac_Ext beta-Neu5Ac
Name: beta-Neu5Ac_Ext -> beta-Neu5Ac
Description: Transport of beta-Neu5Ac_Ext through a bacterial membrane, leading to the presence of beta-Neu5Ac inside the cell.
Type: transport
Pathway Components: beta-Neu5Ac_Ext - OmpF -> beta-Neu5Ac
Components:
Function Name Type
catalyzer OmpF protein
product beta-Neu5Ac simple_molecule
reactant beta-Neu5Ac_Ext simple_molecule
OmpF N-acetylneuraminate_Ext N-acetylneuraminate
Name: N-acetylneuraminate_Ext -> N-acetylneuraminate
Description: Transport of N-acetylneuraminate_Ext through a bacterial membrane, leading to the presence of N-acetylneuraminate inside the cell.
Type: transport
Pathway Components: N-acetylneuraminate_Ext - OmpF -> N-acetylneuraminate
Components:
Function Name Type
product N-acetylneuraminate simple_molecule
reactant N-acetylneuraminate_Ext simple_molecule
catalyzer OmpF protein
OmpF sugar phosphate_Ext sugar phosphate
Name: sugar phosphate_Ext -> sugar phosphate
Description: Transport of sugar phosphate_Ext through a bacterial membrane, leading to the presence of sugar phosphate inside the cell.
Type: transport
Pathway Components: sugar phosphate_Ext - OmpF -> sugar phosphate
Components:
Function Name Type
catalyzer OmpF protein
product sugar phosphate simple_molecule
reactant sugar phosphate_Ext simple_molecule
OmpF aromatic compound_Ext aromatic compound
Name: aromatic compound_Ext -> aromatic compound
Description: Transport of aromatic compound_Ext through a bacterial membrane, leading to the presence of aromatic compound inside the cell.
Type: transport
Pathway Components: aromatic compound_Ext - OmpF -> aromatic compound
Components:
Function Name Type
catalyzer OmpF protein
product aromatic compound simple_molecule
reactant aromatic compound_Ext simple_molecule
OmpF enterobactin_Ext enterobactin
Name: enterobactin_Ext -> enterobactin
Description: Transport of enterobactin_Ext through a bacterial membrane, leading to the presence of enterobactin inside the cell.
Type: transport
Pathway Components: enterobactin_Ext - OmpF -> enterobactin
Components:
Function Name Type
catalyzer OmpF protein
product enterobactin simple_molecule
reactant enterobactin_Ext simple_molecule
OmpF trisaccharide_Ext trisaccharide
Name: trisaccharide_Ext -> trisaccharide
Description: Transport of trisaccharide_Ext through a bacterial membrane, leading to the presence of trisaccharide inside the cell.
Type: transport
Pathway Components: trisaccharide_Ext - OmpF -> trisaccharide
Components:
Function Name Type
catalyzer OmpF protein
product trisaccharide simple_molecule
reactant trisaccharide_Ext simple_molecule
OmpF disaccharide_Ext disaccharide
Name: disaccharide_Ext -> disaccharide
Description: Transport of disaccharide_Ext through a bacterial membrane, leading to the presence of disaccharide inside the cell.
Type: transport
Pathway Components: disaccharide_Ext - OmpF -> disaccharide
Components:
Function Name Type
catalyzer OmpF protein
product disaccharide simple_molecule
reactant disaccharide_Ext simple_molecule
OmpF maltose_Ext maltose
Name: maltose_Ext -> maltose
Description: Transport of maltose_Ext through a bacterial membrane, leading to the presence of maltose inside the cell.
Type: transport
Pathway Components: maltose_Ext - OmpF -> maltose
Components:
Function Name Type
catalyzer OmpF protein
product maltose simple_molecule
reactant maltose_Ext simple_molecule
OmpF chitobiose_Ext chitobiose
Name: chitobiose_Ext -> chitobiose
Description: Transport of chitobiose_Ext through a bacterial membrane, leading to the presence of chitobiose inside the cell.
Type: transport
Pathway Components: chitobiose_Ext - OmpF -> chitobiose
Components:
Function Name Type
catalyzer OmpF protein
product chitobiose simple_molecule
reactant chitobiose_Ext simple_molecule
OmpF oligopeptide_Ext oligopeptide
Name: oligopeptide_Ext -> oligopeptide
Description: Transport of oligopeptide_Ext through a bacterial membrane, leading to the presence of oligopeptide inside the cell.
Type: transport
Pathway Components: oligopeptide_Ext - OmpF -> oligopeptide
Components:
Function Name Type
catalyzer OmpF protein
product oligopeptide simple_molecule
reactant oligopeptide_Ext simple_molecule
OmpF nucleoside_Ext nucleoside
Name: nucleoside_Ext -> nucleoside
Description: Transport of nucleoside_Ext through a bacterial membrane, leading to the presence of nucleoside inside the cell.
Type: transport
Pathway Components: nucleoside_Ext - OmpF -> nucleoside
Components:
Function Name Type
catalyzer OmpF protein
product nucleoside simple_molecule
reactant nucleoside_Ext simple_molecule
OmpF nucleotide_Ext nucleotide
Name: nucleotide_Ext -> nucleotide
Description: Transport of nucleotide_Ext through a bacterial membrane, leading to the presence of nucleotide inside the cell.
Type: transport
Pathway Components: nucleotide_Ext - OmpF -> nucleotide
Components:
Function Name Type
catalyzer OmpF protein
product nucleotide simple_molecule
reactant nucleotide_Ext simple_molecule
OmpF nucleotide sugar_Ext nucleotide sugar
Name: nucleotide sugar_Ext -> nucleotide sugar
Description: Transport of nucleotide sugar_Ext through a bacterial membrane, leading to the presence of nucleotide sugar inside the cell.
Type: transport
Pathway Components: nucleotide sugar_Ext - OmpF -> nucleotide sugar
Components:
Function Name Type
catalyzer OmpF protein
product nucleotide sugar simple_molecule
reactant nucleotide sugar_Ext simple_molecule
OmpF RCHO_Ext RCHO
Name: RCHO_Ext -> RCHO
Description: Transport of RCHO_Ext through a bacterial membrane, leading to the presence of RCHO inside the cell.
Type: transport
Pathway Components: RCHO_Ext - OmpF -> RCHO
Components:
Function Name Type
catalyzer OmpF protein
product RCHO simple_molecule
reactant RCHO_Ext simple_molecule
OmpF lactone_Ext lactone
Name: lactone_Ext -> lactone
Description: Transport of lactone_Ext through a bacterial membrane, leading to the presence of lactone inside the cell.
Type: transport
Pathway Components: lactone_Ext - OmpF -> lactone
Components:
Function Name Type
catalyzer OmpF protein
product lactone simple_molecule
reactant lactone_Ext simple_molecule
OmpF amide_Ext amide
Name: amide_Ext -> amide
Description: Transport of amide_Ext through a bacterial membrane, leading to the presence of amide inside the cell.
Type: transport
Pathway Components: amide_Ext - OmpF -> amide
Components:
Function Name Type
catalyzer OmpF protein
product amide simple_molecule
reactant amide_Ext simple_molecule
OmpF amine_Ext amine
Name: amine_Ext -> amine
Description: Transport of amine_Ext through a bacterial membrane, leading to the presence of amine inside the cell.
Type: transport
Pathway Components: amine_Ext - OmpF -> amine
Components:
Function Name Type
catalyzer OmpF protein
product amine simple_molecule
reactant amine_Ext simple_molecule
OmpF hydroxy carboxylate_Ext hydroxy carboxylate
Name: hydroxy carboxylate_Ext -> hydroxy carboxylate
Description: Transport of hydroxy carboxylate_Ext through a bacterial membrane, leading to the presence of hydroxy carboxylate inside the cell.
Type: transport
Pathway Components: hydroxy carboxylate_Ext - OmpF -> hydroxy carboxylate
Components:
Function Name Type
catalyzer OmpF protein
product hydroxy carboxylate simple_molecule
reactant hydroxy carboxylate_Ext simple_molecule
OmpF aldonate_Ext aldonate
Name: aldonate_Ext -> aldonate
Description: Transport of aldonate_Ext through a bacterial membrane, leading to the presence of aldonate inside the cell.
Type: transport
Pathway Components: aldonate_Ext - OmpF -> aldonate
Components:
Function Name Type
catalyzer OmpF protein
product aldonate simple_molecule
reactant aldonate_Ext simple_molecule
OmpF MCFA_Ext MCFA
Name: MCFA_Ext -> MCFA
Description: Transport of MCFA_Ext through a bacterial membrane, leading to the presence of MCFA inside the cell.
Type: transport
Pathway Components: MCFA_Ext - OmpF -> MCFA
Components:
Function Name Type
product MCFA simple_molecule
reactant MCFA_Ext simple_molecule
catalyzer OmpF protein
OmpF caprate_Ext caprate
Name: caprate_Ext -> caprate
Description: Transport of caprate_Ext through a bacterial membrane, leading to the presence of caprate inside the cell.
Type: transport
Pathway Components: caprate_Ext - OmpF -> caprate
Components:
Function Name Type
catalyzer OmpF protein
product caprate simple_molecule
reactant caprate_Ext simple_molecule
OmpF monocarboxylate_Ext monocarboxylate
Name: monocarboxylate_Ext -> monocarboxylate
Description: Transport of monocarboxylate_Ext through a bacterial membrane, leading to the presence of monocarboxylate inside the cell.
Type: transport
Pathway Components: monocarboxylate_Ext - OmpF -> monocarboxylate
Components:
Function Name Type
catalyzer OmpF protein
product monocarboxylate simple_molecule
reactant monocarboxylate_Ext simple_molecule
OmpF betaine_Ext betaine
Name: betaine_Ext -> betaine
Description: Transport of betaine_Ext through a bacterial membrane, leading to the presence of betaine inside the cell.
Type: transport
Pathway Components: betaine_Ext - OmpF -> betaine
Components:
Function Name Type
catalyzer OmpF protein
product betaine simple_molecule
reactant betaine_Ext simple_molecule
OmpF dicarboxylate_Ext dicarboxylate
Name: dicarboxylate_Ext -> dicarboxylate
Description: Transport of dicarboxylate_Ext through a bacterial membrane, leading to the presence of dicarboxylate inside the cell.
Type: transport
Pathway Components: dicarboxylate_Ext - OmpF -> dicarboxylate
Components:
Function Name Type
catalyzer OmpF protein
product dicarboxylate simple_molecule
reactant dicarboxylate_Ext simple_molecule
OmpF 5-methylthioribose_Ext 5-methylthioribose
Name: 5-methylthioribose_Ext -> 5-methylthioribose
Description: Transport of 5-methylthioribose_Ext through a bacterial membrane, leading to the presence of 5-methylthioribose inside the cell.
Type: transport
Pathway Components: 5-methylthioribose_Ext - OmpF -> 5-methylthioribose
Components:
Function Name Type
product 5-methylthioribose simple_molecule
reactant 5-methylthioribose_Ext simple_molecule
catalyzer OmpF protein
OmpF inositol_Ext inositol
Name: inositol_Ext -> inositol
Description: Transport of inositol_Ext through a bacterial membrane, leading to the presence of inositol inside the cell.
Type: transport
Pathway Components: inositol_Ext - OmpF -> inositol
Components:
Function Name Type
catalyzer OmpF protein
product inositol simple_molecule
reactant inositol_Ext simple_molecule
OmpF amino acid_Ext amino acid
Name: amino acid_Ext -> amino acid
Description: Transport of amino acid_Ext through a bacterial membrane, leading to the presence of amino acid inside the cell.
Type: transport
Pathway Components: amino acid_Ext - OmpF -> amino acid
Components:
Function Name Type
catalyzer OmpF protein
product amino acid simple_molecule
reactant amino acid_Ext simple_molecule
OmpF base(2)_Ext base(2)
Name: base(2)_Ext -> base(2)
Description: Transport of base(2)_Ext through a bacterial membrane, leading to the presence of base(2) inside the cell.
Type: transport
Pathway Components: base(2)_Ext - OmpF -> base(2)
Components:
Function Name Type
catalyzer OmpF protein
product base(2) simple_molecule
reactant base(2)_Ext simple_molecule
OmpF polyol_Ext polyol
Name: polyol_Ext -> polyol
Description: Transport of polyol_Ext through a bacterial membrane, leading to the presence of polyol inside the cell.
Type: transport
Pathway Components: polyol_Ext - OmpF -> polyol
Components:
Function Name Type
catalyzer OmpF protein
product polyol simple_molecule
reactant polyol_Ext simple_molecule
OmpF short-chain alcohol_Ext short-chain alcohol
Name: short-chain alcohol_Ext -> short-chain alcohol
Description: Transport of short-chain alcohol_Ext through a bacterial membrane, leading to the presence of short-chain alcohol inside the cell.
Type: transport
Pathway Components: short-chain alcohol_Ext - OmpF -> short-chain alcohol
Components:
Function Name Type
catalyzer OmpF protein
product short-chain alcohol simple_molecule
reactant short-chain alcohol_Ext simple_molecule
OmpF short-chain acid anion_Ext short-chain acid anion
Name: short-chain acid anion_Ext -> short-chain acid anion
Description: Transport of short-chain acid anion_Ext through a bacterial membrane, leading to the presence of short-chain acid anion inside the cell.
Type: transport
Pathway Components: short-chain acid anion_Ext - OmpF -> short-chain acid anion
Components:
Function Name Type
catalyzer OmpF protein
product short-chain acid anion simple_molecule
reactant short-chain acid anion_Ext simple_molecule
OmpF organosulfur compound_Ext organosulfur compound
Name: organosulfur compound_Ext -> organosulfur compound
Description: Transport of organosulfur compound_Ext through a bacterial membrane, leading to the presence of organosulfur compound inside the cell.
Type: transport
Pathway Components: organosulfur compound_Ext - OmpF -> organosulfur compound
Components:
Function Name Type
catalyzer OmpF protein
product organosulfur compound simple_molecule
reactant organosulfur compound_Ext simple_molecule
OmpF sulfadiazine_Ext sulfadiazine
Name: sulfadiazine_Ext -> sulfadiazine
Description: Transport of sulfadiazine_Ext through a bacterial membrane, leading to the presence of sulfadiazine inside the cell.
Type: transport
Pathway Components: sulfadiazine_Ext - OmpF -> sulfadiazine
Components:
Function Name Type
catalyzer OmpF protein
product sulfadiazine simple_molecule
reactant sulfadiazine_Ext simple_molecule
OmpF ion_Ext ion
Name: ion_Ext -> ion
Description: Transport of ion_Ext through a bacterial membrane, leading to the presence of ion inside the cell.
Type: transport
Pathway Components: ion_Ext - OmpF -> ion
Components:
Function Name Type
catalyzer OmpF protein
product ion simple_molecule
reactant ion_Ext simple_molecule
OmpF glycerol 1-phosphate_Ext glycerol 1-phosphate
Name: glycerol 1-phosphate_Ext -> glycerol 1-phosphate
Description: Transport of glycerol 1-phosphate_Ext through a bacterial membrane, leading to the presence of glycerol 1-phosphate inside the cell.
Type: transport
Pathway Components: glycerol 1-phosphate_Ext - OmpF -> glycerol 1-phosphate
Components:
Function Name Type
catalyzer OmpF protein
product glycerol 1-phosphate simple_molecule
reactant glycerol 1-phosphate_Ext simple_molecule
OmpF + TolB TolB-OmpF
Name: OmpF + TolB -> TolB-OmpF
Description: Reaction transforming OmpF, TolB into TolB-OmpF
Type: state transition
Pathway Components: OmpF + TolB -> TolB-OmpF
Components:
Function Name Type
reactant OmpF protein
reactant TolB protein
product TolB-OmpF complex
asr_mRNA Asr
Name: asr_mRNA -> Asr
Description: Translation of Asr
Type: translation
Pathway Components: asr_mRNA -> Asr
Components:
Function Name Type
product Asr protein
reactant asr_mRNA RNA
csgDEFG_mRNA CsgD
Name: csgDEFG_mRNA -> CsgD
Description: Translation of CsgD
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgD
Components:
Function Name Type
product CsgD protein
reactant csgDEFG_mRNA RNA
csgDEFG_mRNA CsgE
Name: csgDEFG_mRNA -> CsgE
Description: Translation of CsgE
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgE
Components:
Function Name Type
product CsgE protein
reactant csgDEFG_mRNA RNA
CsgG + CsgE CsgE-CsgG
Name: CsgG + CsgE -> CsgE-CsgG
Description: Reaction transforming CsgG, CsgE into CsgE-CsgG
Type: state transition
Pathway Components: CsgG + CsgE -> CsgE-CsgG
Components:
Function Name Type
reactant CsgE protein
product CsgE-CsgG complex
reactant CsgG protein
CsgE-CsgG CsgA_Ext CsgA
Name: CsgA_Ext -> CsgA
Description: Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the cell.
Type: transport
Pathway Components: CsgA_Ext - CsgE-CsgG -> CsgA
Components:
Function Name Type
product CsgA simple_molecule
reactant CsgA_Ext simple_molecule
catalyzer CsgE-CsgG complex
csgDEFG_mRNA CsgF
Name: csgDEFG_mRNA -> CsgF
Description: Translation of CsgF
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgF
Components:
Function Name Type
product CsgF protein
reactant csgDEFG_mRNA RNA
csgDEFG_mRNA CsgG
Name: csgDEFG_mRNA -> CsgG
Description: Translation of CsgG
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgG
Components:
Function Name Type
product CsgG protein
reactant csgDEFG_mRNA RNA
narGHJI_mRNA NarG
Name: narGHJI_mRNA -> NarG
Description: Translation of NarG
Type: translation
Pathway Components: narGHJI_mRNA -> NarG
Components:
Function Name Type
product NarG protein
reactant narGHJI_mRNA RNA
NarI + NarH + NarG NarG-NarH-NarI
Name: NarI + NarH + NarG -> NarG-NarH-NarI
Description: Reaction transforming NarI, NarH, NarG into NarG-NarH-NarI
Type: state transition
Pathway Components: NarI + NarH + NarG -> NarG-NarH-NarI
Components:
Function Name Type
reactant NarG protein
product NarG-NarH-NarI complex
reactant NarH protein
reactant NarI protein
NarG-NarH-NarI menaquinol_Ext + nitrate_Ext vitamin K2 + nitrite
Name: menaquinol_Ext + nitrate_Ext -> vitamin K2 + nitrite
Description: Transport of menaquinol_Ext, nitrate_Ext through a bacterial membrane, leading to the presence of vitamin K2, nitrite inside the cell.
Type: transport
Pathway Components: menaquinol_Ext + nitrate_Ext - NarG-NarH-NarI -> vitamin K2 + nitrite
Components:
Function Name Type
catalyzer NarG-NarH-NarI complex
reactant menaquinol_Ext simple_molecule
reactant nitrate_Ext simple_molecule
product nitrite simple_molecule
product vitamin K2 simple_molecule
NarG-NarH-NarI ubiquinol_Ext + nitrate_Ext ubiquinone + nitrite
Name: ubiquinol_Ext + nitrate_Ext -> ubiquinone + nitrite
Description: Transport of ubiquinol_Ext, nitrate_Ext through a bacterial membrane, leading to the presence of ubiquinone, nitrite inside the cell.
Type: transport
Pathway Components: ubiquinol_Ext + nitrate_Ext - NarG-NarH-NarI -> ubiquinone + nitrite
Components:
Function Name Type
catalyzer NarG-NarH-NarI complex
reactant nitrate_Ext simple_molecule
product nitrite simple_molecule
reactant ubiquinol_Ext simple_molecule
product ubiquinone simple_molecule
NarG-NarH-NarI A(H2) + TeO2 acceptors + Te0
Name: A(H2) + TeO2 -> acceptors + Te0
Description: Reaction transforming A(H2), TeO2 into acceptors, Te0
Type: state transition
Pathway Components: A(H2) + TeO2 - NarG-NarH-NarI -> acceptors + Te0
Components:
Function Name Type
reactant A(H2) simple_molecule
catalyzer NarG-NarH-NarI complex
product Te0 simple_molecule
reactant TeO2 simple_molecule
product acceptors simple_molecule
narGHJI_mRNA NarH
Name: narGHJI_mRNA -> NarH
Description: Translation of NarH
Type: translation
Pathway Components: narGHJI_mRNA -> NarH
Components:
Function Name Type
product NarH protein
reactant narGHJI_mRNA RNA
narGHJI_mRNA NarJ
Name: narGHJI_mRNA -> NarJ
Description: Translation of NarJ
Type: translation
Pathway Components: narGHJI_mRNA -> NarJ
Components:
Function Name Type
product NarJ protein
reactant narGHJI_mRNA RNA
narGHJI_mRNA NarI
Name: narGHJI_mRNA -> NarI
Description: Translation of NarI
Type: translation
Pathway Components: narGHJI_mRNA -> NarI
Components:
Function Name Type
product NarI protein
reactant narGHJI_mRNA RNA