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RstA Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
Asr CsgD CsgE CsgF CsgG NarG NarH NarI NarJ OmpF phosphate RstA a menaquinol_Ext menaquinone asr asr_mRNA csgDEFG csgDEFG_mRNA CsgA CsgA_Ext glycine betaine glycine betaine_Ext hydrophilic solute or ion hydrophilic solute or ion_Ext narGHJI narGHJI_mRNA nitrate_Ext nitrite ompF ompF_mRNA RstA phosphate CsgG CsgE CsgF NarG NarH NarI


Gensor Unit       
Name: RstA
Classification:
Groups: GUs related to the two-component system
Gene Ontology Terms (GO): GO:0000986 - bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding
GO:0046930 - pore complex
GO:0008940 - nitrate reductase activity
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0016491 - oxidoreductase activity
GO:0051082 - unfolded protein binding
GO:0016020 - membrane
GO:0044010 - single-species biofilm formation
GO:0010043 - response to zinc ion
GO:0010447 - response to acidic pH
GO:0042128 - nitrate assimilation
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Components:
Function Name Type
RNA ompF_mRNA RNA


Reactions       
Showing 21 reactions
RstA + phosphate RstA-Phosphorylated
Name: RstA + phosphate -> RstA-Phosphorylated
Description: Reaction transforming RstA, phosphate into RstA-Phosphorylated
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant RstA protein nd nd
reactant phosphate simple molecule nd nd
product RstA-Phosphorylated complex nd nd
asr asr_mRNA
Name: asr -> asr_mRNA
Description: Transcription of transcription unit asr; reaction activation by PhoB-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant asr gene nd nd
product asr_mRNA RNA nd nd
csgDEFG csgDEFG_mRNA
Name: csgDEFG -> csgDEFG_mRNA
Description: Transcription of transcription unit csgDEFG; reaction activation by BasR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product csgDEFG_mRNA RNA nd nd
reactant csgDEFG gene nd nd
narGHJI narGHJI_mRNA
Name: narGHJI -> narGHJI_mRNA
Description: Transcription of transcription unit narGHJI; reaction activation by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant narGHJI gene nd nd
product narGHJI_mRNA RNA nd nd
ompF ompF_mRNA
Name: ompF -> ompF_mRNA
Description: Transcription of transcription unit ompF; reaction inhibition by CpxR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant ompF gene nd nd
product ompF_mRNA RNA nd nd
csgDEFG_mRNA CsgF
Name: csgDEFG_mRNA -> CsgF
Description: Translation of CsgF
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgDEFG_mRNA RNA nd nd
product CsgF protein nd nd
CsgG + CsgE + CsgF CsgG-CsgE-CsgF
Name: CsgG + CsgE + CsgF -> CsgG-CsgE-CsgF
Description: Reaction transforming CsgG, CsgE, CsgF into CsgG-CsgE-CsgF
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product CsgG-CsgE-CsgF complex nd nd
reactant CsgF protein nd nd
reactant CsgG protein nd nd
reactant CsgE protein nd nd
CsgA_Ext CsgA
Name: CsgA_Ext -> CsgA
Description: Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant CsgA_Ext simple molecule nd nd
product CsgA simple molecule nd nd
ompF_mRNA OmpF
Name: ompF_mRNA -> OmpF
Description: Translation of OmpF
Type: translation
Components:
Function Name Type Evidence Reference(s)
product OmpF protein nd nd
reactant ompF_mRNA RNA nd nd
glycine betaine_Ext glycine betaine
Name: glycine betaine_Ext -> glycine betaine
Description: Transport of glycine betaine_Ext through a bacterial membrane, leading to the presence of glycine betaine inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant glycine betaine_Ext simple molecule nd nd
product glycine betaine simple molecule nd nd
hydrophilic solute or ion < 600 Da_Ext hydrophilic solute or ion < 600 Da
Name: hydrophilic solute or ion < 600 Da_Ext -> hydrophilic solute or ion < 600 Da
Description: Transport of hydrophilic solute or ion < 600 Da_Ext through a bacterial membrane, leading to the presence of hydrophilic solute or ion < 600 Da inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product hydrophilic solute or ion < 600 Da simple molecule nd nd
reactant hydrophilic solute or ion < 600 Da_Ext simple molecule nd nd
narGHJI_mRNA NarJ
Name: narGHJI_mRNA -> NarJ
Description: Translation of NarJ
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant narGHJI_mRNA RNA nd nd
product NarJ protein nd nd
asr_mRNA Asr
Name: asr_mRNA -> Asr
Description: Translation of Asr
Type: translation
Components:
Function Name Type Evidence Reference(s)
product Asr protein nd nd
reactant asr_mRNA RNA nd nd
narGHJI_mRNA NarG
Name: narGHJI_mRNA -> NarG
Description: Translation of NarG
Type: translation
Components:
Function Name Type Evidence Reference(s)
product NarG protein nd nd
reactant narGHJI_mRNA RNA nd nd
NarG + NarH + NarI NarG-NarH-NarI
Name: NarG + NarH + NarI -> NarG-NarH-NarI
Description: Reaction transforming NarG, NarH, NarI into NarG-NarH-NarI
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant NarI protein nd nd
product NarG-NarH-NarI complex nd nd
reactant NarH protein nd nd
reactant NarG protein nd nd
a menaquinol_Ext + nitrate_Ext menaquinone + nitrite
Name: a menaquinol_Ext + nitrate_Ext -> menaquinone + nitrite
Description: Transport of a menaquinol_Ext, nitrate_Ext through a bacterial membrane, leading to the presence of menaquinone, nitrite inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product nitrite simple molecule nd nd
reactant a menaquinol_Ext simple molecule nd nd
product menaquinone simple molecule nd nd
reactant nitrate_Ext simple molecule nd nd
csgDEFG_mRNA CsgD
Name: csgDEFG_mRNA -> CsgD
Description: Translation of CsgD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgDEFG_mRNA RNA nd nd
product CsgD protein nd nd
narGHJI_mRNA NarH
Name: narGHJI_mRNA -> NarH
Description: Translation of NarH
Type: translation
Components:
Function Name Type Evidence Reference(s)
product NarH protein nd nd
reactant narGHJI_mRNA RNA nd nd
csgDEFG_mRNA CsgG
Name: csgDEFG_mRNA -> CsgG
Description: Translation of CsgG
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgDEFG_mRNA RNA nd nd
product CsgG protein nd nd
csgDEFG_mRNA CsgE
Name: csgDEFG_mRNA -> CsgE
Description: Translation of CsgE
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CsgE protein nd nd
reactant csgDEFG_mRNA RNA nd nd
narGHJI_mRNA NarI
Name: narGHJI_mRNA -> NarI
Description: Translation of NarI
Type: translation
Components:
Function Name Type Evidence Reference(s)
product NarI protein nd nd
reactant narGHJI_mRNA RNA nd nd



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