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RutR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
(Z)-2-methyl-peroxyaminoacrylate (Z)-2-methylureidoperacrylic acid peroxy aminoacrylate ureidoperacrylic acid hydracrylic acid 3-ureidoacrylate CarA CarB ExbB ExbD FMN Reduced FMN FepA FepB FepC FepD FepG GadW GadX GloA Gmr L-glutamate L-glutamine N-EM ethylsuccinimide NemA NemR RutA RutB RutC RutD RutE RutF RutG RutR S-lactoyl-glutathione thymine TonB uracil a reduced electron acceptor aminoacrylate ammonia an oxidized electron acceptor carbonate carAB carAB_mRNA carbamate carbamoyl-P cyclic di-3',5'-guanylate fepB fepB_mRNA ferric enterobactin ferric enterobactin_Ext This Gensor Unit is not yet available This Gensor Unit is not yet available This Gensor Unit is not yet available This Gensor Unit is not yet available GSH gmr gmr_mRNA 5'pGpG malonate-S-ald oxopropanal nemRA nemRA-gloA nemRA-gloA_mRNA nemRA_mRNA oxygen phosphate rutABCDEFG rutABCDEFG_mRNA rutR rutR_mRNA thymine uracil RutR thymine RutR uracil FepB FepG FepD FepC FepA TonB ExbB ExbD FepC FepD FepG FepB CarB CarA phosphate


Gensor Unit       
Name: RutR
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0055072 - iron ion homeostasis
GO:0045892 - negative regulation of transcription, DNA-templated
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0003824 - catalytic activity
GO:0008652 - cellular amino acid biosynthetic process
GO:0006221 - pyrimidine nucleotide biosynthetic process
GO:0010181 - FMN binding
GO:0016020 - membrane
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016491 - oxidoreductase activity
GO:0046256 - 2,4,6-trinitrotoluene catabolic process
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Components:
Function Name Type
simple molecule uracil simple molecule


Reactions       
Showing 47 reactions
carAB carAB_mRNA
Name: carAB -> carAB_mRNA
Description: Transcription of transcription unit carAB; reaction inhibition by ArgR-L-arginine.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant carAB gene nd nd
product carAB_mRNA RNA nd nd
fepB fepB_mRNA
Name: fepB -> fepB_mRNA
Description: Transcription of transcription unit fepB; reaction inhibition by Fur-Fe(II).
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant fepB gene nd nd
product fepB_mRNA RNA nd nd
gadX gadX_mRNA
Name: gadX -> gadX_mRNA
Description: Transcription of transcription unit gadX; reaction activation by GadE.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product gadX_mRNA RNA nd nd
reactant gadX gene nd nd
gadXW gadXW_mRNA
Name: gadXW -> gadXW_mRNA
Description: Transcription of transcription unit gadXW; reaction activation by GadE.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product gadXW_mRNA RNA nd nd
reactant gadXW gene nd nd
gmr gmr_mRNA
Name: gmr -> gmr_mRNA
Description: Transcription of transcription unit gmr; reaction inhibition by FliZ.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant gmr gene nd nd
product gmr_mRNA RNA nd nd
nemRA nemRA_mRNA
Name: nemRA -> nemRA_mRNA
Description: Transcription of transcription unit nemRA; reaction inhibition by NemR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product nemRA_mRNA RNA nd nd
reactant nemRA gene nd nd
nemRA-gloA nemRA-gloA_mRNA
Name: nemRA-gloA -> nemRA-gloA_mRNA
Description: Transcription of transcription unit nemRA-gloA; reaction inhibition by NemR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant nemRA-gloA gene nd nd
product nemRA-gloA_mRNA RNA nd nd
rutABCDEFG rutABCDEFG_mRNA
Name: rutABCDEFG -> rutABCDEFG_mRNA
Description: Transcription of transcription unit rutABCDEFG; reaction activation by NtrC-phosphate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product rutABCDEFG_mRNA RNA nd nd
reactant rutABCDEFG gene nd nd
rutR rutR_mRNA
Name: rutR -> rutR_mRNA
Description: Transcription of transcription unit rutR; reaction inhibition by RutR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant rutR gene nd nd
product rutR_mRNA RNA nd nd
RutR + thymine RutR-thymine
Name: RutR + thymine -> RutR-thymine
Description: Reaction transforming RutR, thymine into RutR-thymine
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant thymine simple molecule nd nd
product RutR-thymine complex nd nd
reactant RutR protein nd nd
RutR + uracil RutR-uracil
Name: RutR + uracil -> RutR-uracil
Description: Reaction transforming RutR, uracil into RutR-uracil
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant uracil simple molecule nd nd
product RutR-uracil complex nd nd
reactant RutR protein nd nd
rutABCDEFG_mRNA RutC
Name: rutABCDEFG_mRNA -> RutC
Description: Translation of RutC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product RutC protein nd nd
reactant rutABCDEFG_mRNA RNA nd nd
peroxy aminoacrylate + a reduced electron acceptor aminoacrylate + an oxidized electron acceptor
Name: peroxy aminoacrylate + a reduced electron acceptor -> aminoacrylate + an oxidized electron acceptor
Description: Reaction transforming peroxy aminoacrylate, a reduced electron acceptor into aminoacrylate, an oxidized electron acceptor
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product an oxidized electron acceptor simple molecule nd nd
reactant peroxy aminoacrylate simple molecule nd nd
product aminoacrylate simple molecule nd nd
reactant a reduced electron acceptor simple molecule nd nd
fepB_mRNA FepB
Name: fepB_mRNA -> FepB
Description: Translation of FepB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fepB_mRNA RNA nd nd
product FepB protein nd nd
FepB + FepG + FepD + FepC + FepA + TonB + ExbB + ExbD FepB-FepG-FepD-FepC-FepA-TonB-ExbB-ExbD
Name: FepB + FepG + FepD + FepC + FepA + TonB + ExbB + ExbD -> FepB-FepG-FepD-FepC-FepA-TonB-ExbB-ExbD
Description: Reaction transforming FepB, FepG, FepD, FepC, FepA, TonB, ExbB, ExbD into FepB-FepG-FepD-FepC-FepA-TonB-ExbB-ExbD
Type: state transition
Components: Show/Hide Components Table
Function Name Type Evidence Reference(s)
reactant TonB protein nd nd
reactant ExbD protein nd nd
reactant FepD protein nd nd
reactant FepA protein nd nd
reactant ExbB protein nd nd
reactant FepC protein nd nd
product FepB-FepG-FepD-FepC-FepA-TonB-ExbB-ExbD complex nd nd
reactant FepG protein nd nd
reactant FepB protein nd nd
ferric enterobactin_Ext ferric enterobactin
Name: ferric enterobactin_Ext -> ferric enterobactin
Description: Transport of ferric enterobactin_Ext through a bacterial membrane, leading to the presence of ferric enterobactin inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product ferric enterobactin simple molecule nd nd
reactant ferric enterobactin_Ext simple molecule nd nd
FepC + FepD + FepG + FepB FepC-FepD-FepG-FepB
Name: FepC + FepD + FepG + FepB -> FepC-FepD-FepG-FepB
Description: Reaction transforming FepC, FepD, FepG, FepB into FepC-FepD-FepG-FepB
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant FepG protein nd nd
reactant FepC protein nd nd
product FepC-FepD-FepG-FepB complex nd nd
reactant FepD protein nd nd
reactant FepB protein nd nd
ferric enterobactin_Ext phosphate + ferric enterobactin
Name: ferric enterobactin_Ext -> phosphate + ferric enterobactin
Description: Transport of ferric enterobactin_Ext through a bacterial membrane, leading to the presence of phosphate, ferric enterobactin inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product ferric enterobactin simple molecule nd nd
reactant ferric enterobactin_Ext simple molecule nd nd
product phosphate simple molecule nd nd
gadXW_mRNA GadW
Name: gadXW_mRNA -> GadW
Description: Translation of GadW
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gadXW_mRNA RNA nd nd
product GadW protein nd nd
rutR_mRNA RutR
Name: rutR_mRNA -> RutR
Description: Translation of RutR
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant rutR_mRNA RNA nd nd
product RutR protein nd nd
rutABCDEFG_mRNA RutA
Name: rutABCDEFG_mRNA -> RutA
Description: Translation of RutA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant rutABCDEFG_mRNA RNA nd nd
product RutA protein nd nd
thymine + oxygen + Reduced FMN (Z)-2-methylureidoperacrylic acid + FMN
Name: thymine + oxygen + Reduced FMN -> (Z)-2-methylureidoperacrylic acid + FMN
Description: Reaction transforming thymine, oxygen, Reduced FMN into (Z)-2-methylureidoperacrylic acid, FMN
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant Reduced FMN simple molecule nd nd
product (Z)-2-methylureidoperacrylic acid simple molecule nd nd
reactant thymine simple molecule nd nd
reactant oxygen simple molecule nd nd
product FMN simple molecule nd nd
uracil + oxygen + Reduced FMN ureidoperacrylic acid + FMN
Name: uracil + oxygen + Reduced FMN -> ureidoperacrylic acid + FMN
Description: Reaction transforming uracil, oxygen, Reduced FMN into ureidoperacrylic acid, FMN
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant Reduced FMN simple molecule nd nd
product ureidoperacrylic acid simple molecule nd nd
reactant oxygen simple molecule nd nd
reactant uracil simple molecule nd nd
product FMN simple molecule nd nd
carAB_mRNA CarA
Name: carAB_mRNA -> CarA
Description: Translation of CarA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CarA protein nd nd
reactant carAB_mRNA RNA nd nd
CarB + CarA CarB-CarA
Name: CarB + CarA -> CarB-CarA
Description: Reaction transforming CarB, CarA into CarB-CarA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant CarA protein nd nd
product CarB-CarA complex nd nd
reactant CarB protein nd nd
L-glutamine + carbonate carbamoyl-P + L-glutamate + phosphate
Name: L-glutamine + carbonate -> carbamoyl-P + L-glutamate + phosphate
Description: Reaction transforming L-glutamine, carbonate into carbamoyl-P, L-glutamate , phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product phosphate simple molecule nd nd
product carbamoyl-P simple molecule nd nd
product L-glutamate simple molecule nd nd
reactant carbonate simple molecule nd nd
reactant L-glutamine simple molecule nd nd
L-glutamine L-glutamate + ammonia
Name: L-glutamine -> L-glutamate + ammonia
Description: Reaction transforming L-glutamine into L-glutamate, ammonia
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product L-glutamate simple molecule nd nd
reactant L-glutamine simple molecule nd nd
product ammonia simple molecule nd nd
carbonate + ammonia phosphate + carbamoyl-P
Name: carbonate + ammonia -> phosphate + carbamoyl-P
Description: Reaction transforming carbonate, ammonia into phosphate, carbamoyl-P
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant ammonia simple molecule nd nd
product carbamoyl-P simple molecule nd nd
reactant carbonate simple molecule nd nd
product phosphate simple molecule nd nd
rutABCDEFG_mRNA RutB
Name: rutABCDEFG_mRNA -> RutB
Description: Translation of RutB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant rutABCDEFG_mRNA RNA nd nd
product RutB protein nd nd
(Z)-2-methylureidoperacrylic acid (Z)-2-methyl-peroxyaminoacrylate + carbamate
Name: (Z)-2-methylureidoperacrylic acid -> (Z)-2-methyl-peroxyaminoacrylate + carbamate
Description: Reaction transforming (Z)-2-methylureidoperacrylic acid into (Z)-2-methyl-peroxyaminoacrylate, carbamate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product carbamate simple molecule nd nd
reactant (Z)-2-methylureidoperacrylic acid simple molecule nd nd
product (Z)-2-methyl-peroxyaminoacrylate simple molecule nd nd
ureidoperacrylic acid carbamate + peroxy aminoacrylate
Name: ureidoperacrylic acid -> carbamate + peroxy aminoacrylate
Description: Reaction transforming ureidoperacrylic acid into carbamate, peroxy aminoacrylate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product peroxy aminoacrylate simple molecule nd nd
product carbamate simple molecule nd nd
reactant ureidoperacrylic acid simple molecule nd nd
3-ureidoacrylate carbamate + aminoacrylate
Name: 3-ureidoacrylate -> carbamate + aminoacrylate
Description: Reaction transforming 3-ureidoacrylate into carbamate, aminoacrylate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product aminoacrylate simple molecule nd nd
reactant 3-ureidoacrylate simple molecule nd nd
product carbamate simple molecule nd nd
rutABCDEFG_mRNA RutD
Name: rutABCDEFG_mRNA -> RutD
Description: Translation of RutD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant rutABCDEFG_mRNA RNA nd nd
product RutD protein nd nd
aminoacrylate malonate-S-ald + ammonia
Name: aminoacrylate -> malonate-S-ald + ammonia
Description: Reaction transforming aminoacrylate into malonate-S-ald, ammonia
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product ammonia simple molecule nd nd
product malonate-S-ald simple molecule nd nd
reactant aminoacrylate simple molecule nd nd
gmr_mRNA Gmr
Name: gmr_mRNA -> Gmr
Description: Translation of Gmr
Type: translation
Components:
Function Name Type Evidence Reference(s)
product Gmr protein nd nd
reactant gmr_mRNA RNA nd nd
c-di-GMP 5′pGpG
Name: c-di-GMP -> 5′pGpG
Description: Reaction transforming c-di-GMP into 5′pGpG
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product 5′pGpG simple molecule nd nd
reactant c-di-GMP simple molecule nd nd
nemRA-gloA_mRNA NemR
Name: nemRA-gloA_mRNA -> NemR
Description: Translation of NemR
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant nemRA-gloA_mRNA RNA nd nd
product NemR protein nd nd
rutABCDEFG_mRNA RutG
Name: rutABCDEFG_mRNA -> RutG
Description: Translation of RutG
Type: translation
Components:
Function Name Type Evidence Reference(s)
product RutG protein nd nd
reactant rutABCDEFG_mRNA RNA nd nd
nemRA-gloA_mRNA NemA
Name: nemRA-gloA_mRNA -> NemA
Description: Translation of NemA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product NemA protein nd nd
reactant nemRA-gloA_mRNA RNA nd nd
N-EM ethylsuccinimide
Name: N-EM -> ethylsuccinimide
Description: Reaction transforming N-EM into ethylsuccinimide
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant N-EM simple molecule nd nd
product ethylsuccinimide simple molecule nd nd
rutABCDEFG_mRNA RutF
Name: rutABCDEFG_mRNA -> RutF
Description: Translation of RutF
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant rutABCDEFG_mRNA RNA nd nd
product RutF protein nd nd
gadXW_mRNA GadX
Name: gadXW_mRNA -> GadX
Description: Translation of GadX
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GadX protein nd nd
reactant gadXW_mRNA RNA nd nd
nemRA-gloA_mRNA GloA
Name: nemRA-gloA_mRNA -> GloA
Description: Translation of GloA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GloA protein nd nd
reactant nemRA-gloA_mRNA RNA nd nd
S-lactoyl-glutathione oxopropanal + GSH
Name: S-lactoyl-glutathione -> oxopropanal + GSH
Description: Reaction transforming S-lactoyl-glutathione into oxopropanal, GSH
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant S-lactoyl-glutathione simple molecule nd nd
product GSH simple molecule nd nd
product oxopropanal simple molecule nd nd
rutABCDEFG_mRNA RutE
Name: rutABCDEFG_mRNA -> RutE
Description: Translation of RutE
Type: translation
Components:
Function Name Type Evidence Reference(s)
product RutE protein nd nd
reactant rutABCDEFG_mRNA RNA nd nd
hydracrylic acid malonate-S-ald
Name: hydracrylic acid -> malonate-S-ald
Description: Reaction transforming hydracrylic acid into malonate-S-ald
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant hydracrylic acid simple molecule nd nd
product malonate-S-ald simple molecule nd nd
carAB_mRNA CarB
Name: carAB_mRNA -> CarB
Description: Translation of CarB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CarB protein nd nd
reactant carAB_mRNA RNA nd nd



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