RegulonDB RegulonDB

RutR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
(Z)-2-methyl-peroxyaminoacrylate (Z)-2-methylureidoperacrylic acid peroxy aminoacrylate ureidoperacrylic acid hydracrylic acid 3-ureidoacrylate CarA CarB ExbB ExbD FMN Reduced FMN FepA FepB FepC FepD FepG GadW GadX GloA Gmr L-glutamate L-glutamine N-EM ethylsuccinimide NemA NemR RutA RutB RutC RutD RutE RutF RutG RutR S-lactoyl-glutathione thymine TonB uracil a reduced electron acceptor aminoacrylate ammonia an oxidized electron acceptor carbonate carAB carAB_mRNA carbamate carbamoyl-P cyclic di-3',5'-guanylate fepB fepB_mRNA ferric enterobactin ferric enterobactin_Ext This Gensor Unit is not yet available This Gensor Unit is not yet available This Gensor Unit is not yet available This Gensor Unit is not yet available GSH gmr gmr_mRNA 5'pGpG malonate-S-ald oxopropanal nemRA nemRA-gloA nemRA-gloA_mRNA nemRA_mRNA oxygen phosphate rutABCDEFG rutABCDEFG_mRNA rutR rutR_mRNA thymine uracil RutR thymine RutR uracil FepB FepG FepD FepC FepA TonB ExbB ExbD FepC FepD FepG FepB CarB CarA phosphate


Gensor Unit       
Name: RutR
Description: Molecular biology level
Detailed: In the absence of uracil and thymine, RutR positively regulates the expression of genes required for carbamoyl phosphate biosynthetic process and, negatively regulates the expression of genes required for enterobactin transport and xenobiotics and methylglyoxal catabolic processes. Under these conditions, RutR remains unmodified, binds its target sites, enabling in some cases but preventing at others its own expression and the expression of its regulated genes. In the presence of uracil and thymine, RutR is modified to RutR-uracil and RutR-thymine, unbinds its target sites, preventing in some cases but enabling in others, its own expression and the expression of its regulated genes.
Less detailed: In the absence of uracil and thymine, RutR positively regulates the expression of genes needed for carbamoyl phosphate biosynthetic process and , negatively regulates its own expression and the expression of genes required for enterobactin transport and xenobiotics and methylglyoxal catabolic processes.

Physiology level
Detailed: The presence of uracilo or thymine inhibits the expression of genes involved with carbamoyl phosphate synthesis and induces the expression of genes required for enterobactin transport, and xenobiotics and methylglyoxal catabolic processes. Under these conditions, the genes necessary for carbamoyl phosphate synthesis from ammonia or from glutamine are not expressed, and the genes necessary for enterobactin transport into cell, conversion of uracil to malonate-S-ald and of thymine to methyl-peroxyaminoacrylate are expressed.
Less detailed: The presence of uracilo or thymine inhibits the expression of genes needful for carbamoyl phosphate synthesis from ammonia or from glutamine and induces the expression of genes needful for enterobactin transport into cell, conversion of uracil to malonate-S-ald and of thymine to methyl-peroxyaminoacrylate. Read more >
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process
GO:0046256 - 2,4,6-trinitrotoluene catabolic process
GO:0006526 - arginine biosynthetic process
GO:0008652 - cellular amino acid biosynthetic process
GO:0006974 - cellular response to DNA damage stimulus
GO:0019935 - cyclic-nucleotide-mediated signaling
Read more >
cellular_component GO:0005951 - carbamoyl-phosphate synthase complex
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0005887 - integral component of plasma membrane
GO:0030288 - outer membrane-bounded periplasmic space
GO:0042597 - periplasmic space
GO:0005886 - plasma membrane
Read more >
molecular_function GO:0035527 - 3-hydroxypropionate dehydrogenase (NADP+) activity
GO:0005524 - ATP binding
GO:0003677 - DNA binding
GO:0003700 - DNA binding transcription factor activity
GO:0010181 - FMN binding
GO:0005525 - GTP binding
GO:0008748 - N-ethylmaleimide reductase activity
Read more >
Components: Show/Hide Components Table (79 more...)
Function Name Type
simple_molecule (Z)-2-methyl-peroxyaminoacrylate simple_molecule
simple_molecule (Z)-2-methylureidoperacrylic acid simple_molecule
simple_molecule 3-ureidoacrylate simple_molecule
simple_molecule 5'pGpG simple_molecule
simple_molecule A(H2) simple_molecule
simple_molecule CO2 simple_molecule
protein CarA protein
protein CarB protein
complex CarB-CarA complex
protein FepB protein
protein FepC protein
complex FepC-FepD-FepG-FepB complex
protein FepD protein
protein FepG protein
simple_molecule GABA simple_molecule
protein GadA protein
protein GadW protein
protein GadX protein
protein GloA protein
simple_molecule L-glutamate simple_molecule
simple_molecule N-EM simple_molecule
protein NemA protein
protein NemR protein
protein PdeR protein
simple_molecule Reduced FMN simple_molecule
protein RutA protein
protein RutB protein
protein RutC protein
protein RutD protein
protein RutE protein
protein RutF protein
protein RutG protein
protein RutR protein
complex RutR-thymine complex
complex RutR-uracil complex
simple_molecule acceptors simple_molecule
simple_molecule aminoacrylate simple_molecule
simple_molecule ammonium simple_molecule
simple_molecule c-di-GMP simple_molecule
gene carAB gene
RNA carAB_mRNA RNA
simple_molecule carbamate simple_molecule
simple_molecule carbamoyl-P simple_molecule
simple_molecule carbonate simple_molecule
simple_molecule ethylsuccinimide simple_molecule
gene fepB gene
RNA fepB_mRNA RNA
simple_molecule ferric enterobactin simple_molecule
simple_molecule ferric enterobactin_Ext simple_molecule
simple_molecule flavin mononucleotide simple_molecule
gene gadAXW gene
RNA gadAXW_mRNA RNA
gene gadX gene
gene gadXW gene
RNA gadXW_mRNA RNA
RNA gadX_mRNA RNA
simple_molecule glutamine simple_molecule
simple_molecule glutathione simple_molecule
simple_molecule hydracrylic acid simple_molecule
simple_molecule lactoylglutathione simple_molecule
simple_molecule malonate-S-ald simple_molecule
gene nemRA gene
gene nemRA-gloA gene
RNA nemRA-gloA_mRNA RNA
RNA nemRA_mRNA RNA
simple_molecule oxopropanal simple_molecule
simple_molecule oxygen simple_molecule
gene pdeR gene
RNA pdeR_mRNA RNA
simple_molecule peroxy aminoacrylate simple_molecule
simple_molecule phosphate simple_molecule
gene rutABCDEFG gene
RNA rutABCDEFG_mRNA RNA
gene rutR gene
RNA rutR_mRNA RNA
simple_molecule thymine simple_molecule
simple_molecule uracil simple_molecule
simple_molecule uracil_Ext simple_molecule
simple_molecule ureidoperacrylic acid simple_molecule


Reactions       
Showing 54 reactions
RutR carAB carAB_mRNA
Name: carAB -> carAB_mRNA
Description: Transcription of transcription unit carAB. Reaction activation by RutR.
Type: transcription
Pathway Components: carAB - RutR -> carAB_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RutR protein nd nd
reactant carAB gene nd nd
product carAB_mRNA RNA nd nd
RutR fepB fepB_mRNA
Name: fepB -> fepB_mRNA
Description: Transcription of transcription unit fepB. Reaction inhibition by RutR.
Type: transcription
Pathway Components: fepB - RutR -> fepB_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor RutR protein nd nd
reactant fepB gene nd nd
product fepB_mRNA RNA nd nd
RutR gadAXW gadAXW_mRNA
Name: gadAXW -> gadAXW_mRNA
Description: Transcription of transcription unit gadAXW. Reaction inhibition by RutR.
Type: transcription
Pathway Components: gadAXW - RutR -> gadAXW_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor RutR protein nd nd
reactant gadAXW gene nd nd
product gadAXW_mRNA RNA nd nd
RutR nemRA-gloA nemRA-gloA_mRNA
Name: nemRA-gloA -> nemRA-gloA_mRNA
Description: Transcription of transcription unit nemRA-gloA. Reaction inhibition by RutR.
Type: transcription
Pathway Components: nemRA-gloA - RutR -> nemRA-gloA_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor RutR protein nd nd
reactant nemRA-gloA gene nd nd
product nemRA-gloA_mRNA RNA nd nd
RutR pdeR pdeR_mRNA
Name: pdeR -> pdeR_mRNA
Description: Transcription of transcription unit pdeR. Reaction inhibition by RutR.
Type: transcription
Pathway Components: pdeR - RutR -> pdeR_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor RutR protein nd nd
reactant pdeR gene nd nd
product pdeR_mRNA RNA nd nd
RutR rutABCDEFG rutABCDEFG_mRNA
Name: rutABCDEFG -> rutABCDEFG_mRNA
Description: Transcription of transcription unit rutABCDEFG. Reaction inhibition by RutR.
Type: transcription
Pathway Components: rutABCDEFG - RutR -> rutABCDEFG_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor RutR protein nd nd
reactant rutABCDEFG gene nd nd
product rutABCDEFG_mRNA RNA nd nd
RutR rutR rutR_mRNA
Name: rutR -> rutR_mRNA
Description: Transcription of transcription unit rutR. Reaction inhibition by RutR.
Type: transcription
Pathway Components: rutR - RutR -> rutR_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor RutR protein nd nd
reactant rutR gene nd nd
product rutR_mRNA RNA nd nd
thymine + RutR RutR-thymine
Name: thymine + RutR -> RutR-thymine
Description: Reaction transforming thymine, RutR into RutR-thymine
Type: state transition
Pathway Components: thymine + RutR -> RutR-thymine
Components:
Function Name Type Evidence Reference(s)
reactant RutR protein nd nd
product RutR-thymine complex nd nd
reactant thymine simple_molecule nd nd
uracil + RutR RutR-uracil
Name: uracil + RutR -> RutR-uracil
Description: Reaction transforming uracil, RutR into RutR-uracil
Type: state transition
Pathway Components: uracil + RutR -> RutR-uracil
Components:
Function Name Type Evidence Reference(s)
reactant RutR protein nd nd
product RutR-uracil complex nd nd
reactant uracil simple_molecule nd nd
RutR gadX gadX_mRNA
Name: gadX -> gadX_mRNA
Description: Transcription of transcription unit gadX. Reaction inhibition by RutR.
Type: transcription
Pathway Components: gadX - RutR -> gadX_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor RutR protein nd nd
reactant gadX gene nd nd
product gadX_mRNA RNA nd nd
RutR gadXW gadXW_mRNA
Name: gadXW -> gadXW_mRNA
Description: Transcription of transcription unit gadXW. Reaction inhibition by RutR.
Type: transcription
Pathway Components: gadXW - RutR -> gadXW_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor RutR protein nd nd
reactant gadXW gene nd nd
product gadXW_mRNA RNA nd nd
RutR nemRA nemRA_mRNA
Name: nemRA -> nemRA_mRNA
Description: Transcription of transcription unit nemRA. Reaction inhibition by RutR.
Type: transcription
Pathway Components: nemRA - RutR -> nemRA_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor RutR protein nd nd
reactant nemRA gene nd nd
product nemRA_mRNA RNA nd nd
gadAXW_mRNA GadX
Name: gadAXW_mRNA -> GadX
Description: Translation of GadX
Type: translation
Pathway Components: gadAXW_mRNA -> GadX
Components:
Function Name Type Evidence Reference(s)
product GadX protein nd nd
reactant gadAXW_mRNA RNA nd nd
gadAXW_mRNA GadW
Name: gadAXW_mRNA -> GadW
Description: Translation of GadW
Type: translation
Pathway Components: gadAXW_mRNA -> GadW
Components:
Function Name Type Evidence Reference(s)
product GadW protein nd nd
reactant gadAXW_mRNA RNA nd nd
gadAXW_mRNA GadA
Name: gadAXW_mRNA -> GadA
Description: Translation of GadA
Type: translation
Pathway Components: gadAXW_mRNA -> GadA
Components:
Function Name Type Evidence Reference(s)
product GadA protein nd nd
reactant gadAXW_mRNA RNA nd nd
GadA L-glutamate GABA + CO2
Name: L-glutamate -> GABA + CO2
Description: Reaction transforming L-glutamate into GABA, CO2
Type: state transition
Pathway Components: L-glutamate - GadA -> GABA + CO2
Components:
Function Name Type Evidence Reference(s)
product CO2 simple_molecule nd nd
product GABA simple_molecule nd nd
catalyzer GadA protein nd nd
reactant L-glutamate simple_molecule nd nd
nemRA_mRNA NemR
Name: nemRA_mRNA -> NemR
Description: Translation of NemR
Type: translation
Pathway Components: nemRA_mRNA -> NemR
Components:
Function Name Type Evidence Reference(s)
product NemR protein nd nd
reactant nemRA_mRNA RNA nd nd
nemRA_mRNA NemA
Name: nemRA_mRNA -> NemA
Description: Translation of NemA
Type: translation
Pathway Components: nemRA_mRNA -> NemA
Components:
Function Name Type Evidence Reference(s)
product NemA protein nd nd
reactant nemRA_mRNA RNA nd nd
NemA N-EM ethylsuccinimide
Name: N-EM -> ethylsuccinimide
Description: Reaction transforming N-EM into ethylsuccinimide
Type: state transition
Pathway Components: N-EM - NemA -> ethylsuccinimide
Components:
Function Name Type Evidence Reference(s)
reactant N-EM simple_molecule nd nd
catalyzer NemA protein nd nd
product ethylsuccinimide simple_molecule nd nd
nemRA-gloA_mRNA NemR
Name: nemRA-gloA_mRNA -> NemR
Description: Translation of NemR
Type: translation
Pathway Components: nemRA-gloA_mRNA -> NemR
Components:
Function Name Type Evidence Reference(s)
product NemR protein nd nd
reactant nemRA-gloA_mRNA RNA nd nd
nemRA-gloA_mRNA NemA
Name: nemRA-gloA_mRNA -> NemA
Description: Translation of NemA
Type: translation
Pathway Components: nemRA-gloA_mRNA -> NemA
Components:
Function Name Type Evidence Reference(s)
product NemA protein nd nd
reactant nemRA-gloA_mRNA RNA nd nd
nemRA-gloA_mRNA GloA
Name: nemRA-gloA_mRNA -> GloA
Description: Translation of GloA
Type: translation
Pathway Components: nemRA-gloA_mRNA -> GloA
Components:
Function Name Type Evidence Reference(s)
product GloA protein nd nd
reactant nemRA-gloA_mRNA RNA nd nd
GloA oxopropanal + glutathione lactoylglutathione
Name: oxopropanal + glutathione -> lactoylglutathione
Description: Reaction transforming oxopropanal, glutathione into lactoylglutathione
Type: state transition
Pathway Components: oxopropanal + glutathione - GloA -> lactoylglutathione
Components:
Function Name Type Evidence Reference(s)
catalyzer GloA protein nd nd
reactant glutathione simple_molecule nd nd
product lactoylglutathione simple_molecule nd nd
reactant oxopropanal simple_molecule nd nd
fepB_mRNA FepB
Name: fepB_mRNA -> FepB
Description: Translation of FepB
Type: translation
Pathway Components: fepB_mRNA -> FepB
Components:
Function Name Type Evidence Reference(s)
product FepB protein nd nd
reactant fepB_mRNA RNA nd nd
FepD + FepB + FepG + FepC FepC-FepD-FepG-FepB
Name: FepD + FepB + FepG + FepC -> FepC-FepD-FepG-FepB
Description: Reaction transforming FepD, FepB, FepG, FepC into FepC-FepD-FepG-FepB
Type: state transition
Pathway Components: FepD + FepB + FepG + FepC -> FepC-FepD-FepG-FepB
Components:
Function Name Type Evidence Reference(s)
reactant FepB protein nd nd
reactant FepC protein nd nd
product FepC-FepD-FepG-FepB complex nd nd
reactant FepD protein nd nd
reactant FepG protein nd nd
FepC-FepD-FepG-FepB ferric enterobactin_Ext ferric enterobactin
Name: ferric enterobactin_Ext -> ferric enterobactin
Description: Transport of ferric enterobactin_Ext through a bacterial membrane, leading to the presence of ferric enterobactin inside the cell.
Type: transport
Pathway Components: ferric enterobactin_Ext - FepC-FepD-FepG-FepB -> ferric enterobactin
Components:
Function Name Type Evidence Reference(s)
catalyzer FepC-FepD-FepG-FepB complex nd nd
product ferric enterobactin simple_molecule nd nd
reactant ferric enterobactin_Ext simple_molecule nd nd
gadX_mRNA GadX
Name: gadX_mRNA -> GadX
Description: Translation of GadX
Type: translation
Pathway Components: gadX_mRNA -> GadX
Components:
Function Name Type Evidence Reference(s)
product GadX protein nd nd
reactant gadX_mRNA RNA nd nd
rutABCDEFG_mRNA RutA
Name: rutABCDEFG_mRNA -> RutA
Description: Translation of RutA
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutA
Components:
Function Name Type Evidence Reference(s)
product RutA protein nd nd
reactant rutABCDEFG_mRNA RNA nd nd
RutA Reduced FMN + oxygen + uracil ureidoperacrylic acid + flavin mononucleotide
Name: Reduced FMN + oxygen + uracil -> ureidoperacrylic acid + flavin mononucleotide
Description: Reaction transforming Reduced FMN, oxygen, uracil into ureidoperacrylic acid, flavin mononucleotide
Type: state transition
Pathway Components: Reduced FMN + oxygen + uracil - RutA -> ureidoperacrylic acid + flavin mononucleotide
Components:
Function Name Type Evidence Reference(s)
reactant Reduced FMN simple_molecule nd nd
catalyzer RutA protein nd nd
product flavin mononucleotide simple_molecule nd nd
reactant oxygen simple_molecule nd nd
reactant uracil simple_molecule nd nd
product ureidoperacrylic acid simple_molecule nd nd
RutA Reduced FMN + thymine + oxygen Products
Name: Reduced FMN + thymine + oxygen -> (Z)-2-methylureidoperacrylic acid + flavin mononucleotide
Description: Reaction transforming Reduced FMN, thymine, oxygen into (Z)-2-methylureidoperacrylic acid, flavin mononucleotide
Type: state transition
Pathway Components: Reduced FMN + thymine + oxygen - RutA -> (Z)-2-methylureidoperacrylic acid + flavin mononucleotide
Components:
Function Name Type Evidence Reference(s)
product (Z)-2-methylureidoperacrylic acid simple_molecule nd nd
reactant Reduced FMN simple_molecule nd nd
catalyzer RutA protein nd nd
product flavin mononucleotide simple_molecule nd nd
reactant oxygen simple_molecule nd nd
reactant thymine simple_molecule nd nd
rutABCDEFG_mRNA RutB
Name: rutABCDEFG_mRNA -> RutB
Description: Translation of RutB
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutB
Components:
Function Name Type Evidence Reference(s)
product RutB protein nd nd
reactant rutABCDEFG_mRNA RNA nd nd
RutB (Z)-2-methylureidoperacrylic acid (Z)-2-methyl-peroxyaminoacrylate + carbamate
Name: (Z)-2-methylureidoperacrylic acid -> (Z)-2-methyl-peroxyaminoacrylate + carbamate
Description: Reaction transforming (Z)-2-methylureidoperacrylic acid into (Z)-2-methyl-peroxyaminoacrylate, carbamate
Type: state transition
Pathway Components: (Z)-2-methylureidoperacrylic acid - RutB -> (Z)-2-methyl-peroxyaminoacrylate + carbamate
Components:
Function Name Type Evidence Reference(s)
product (Z)-2-methyl-peroxyaminoacrylate simple_molecule nd nd
reactant (Z)-2-methylureidoperacrylic acid simple_molecule nd nd
catalyzer RutB protein nd nd
product carbamate simple_molecule nd nd
RutB ureidoperacrylic acid peroxy aminoacrylate + carbamate
Name: ureidoperacrylic acid -> peroxy aminoacrylate + carbamate
Description: Reaction transforming ureidoperacrylic acid into peroxy aminoacrylate, carbamate
Type: state transition
Pathway Components: ureidoperacrylic acid - RutB -> peroxy aminoacrylate + carbamate
Components:
Function Name Type Evidence Reference(s)
catalyzer RutB protein nd nd
product carbamate simple_molecule nd nd
product peroxy aminoacrylate simple_molecule nd nd
reactant ureidoperacrylic acid simple_molecule nd nd
RutB 3-ureidoacrylate aminoacrylate + carbamate
Name: 3-ureidoacrylate -> aminoacrylate + carbamate
Description: Reaction transforming 3-ureidoacrylate into aminoacrylate, carbamate
Type: state transition
Pathway Components: 3-ureidoacrylate - RutB -> aminoacrylate + carbamate
Components:
Function Name Type Evidence Reference(s)
reactant 3-ureidoacrylate simple_molecule nd nd
catalyzer RutB protein nd nd
product aminoacrylate simple_molecule nd nd
product carbamate simple_molecule nd nd
rutABCDEFG_mRNA RutC
Name: rutABCDEFG_mRNA -> RutC
Description: Translation of RutC
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutC
Components:
Function Name Type Evidence Reference(s)
product RutC protein nd nd
reactant rutABCDEFG_mRNA RNA nd nd
RutC peroxy aminoacrylate + A(H2) aminoacrylate + acceptors
Name: peroxy aminoacrylate + A(H2) -> aminoacrylate + acceptors
Description: Reaction transforming peroxy aminoacrylate, A(H2) into aminoacrylate, acceptors
Type: state transition
Pathway Components: peroxy aminoacrylate + A(H2) - RutC -> aminoacrylate + acceptors
Components:
Function Name Type Evidence Reference(s)
reactant A(H2) simple_molecule nd nd
catalyzer RutC protein nd nd
product acceptors simple_molecule nd nd
product aminoacrylate simple_molecule nd nd
reactant peroxy aminoacrylate simple_molecule nd nd
rutABCDEFG_mRNA RutD
Name: rutABCDEFG_mRNA -> RutD
Description: Translation of RutD
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutD
Components:
Function Name Type Evidence Reference(s)
product RutD protein nd nd
reactant rutABCDEFG_mRNA RNA nd nd
RutD aminoacrylate malonate-S-ald + ammonium
Name: aminoacrylate -> malonate-S-ald + ammonium
Description: Reaction transforming aminoacrylate into malonate-S-ald, ammonium
Type: state transition
Pathway Components: aminoacrylate - RutD -> malonate-S-ald + ammonium
Components:
Function Name Type Evidence Reference(s)
catalyzer RutD protein nd nd
reactant aminoacrylate simple_molecule nd nd
product ammonium simple_molecule nd nd
product malonate-S-ald simple_molecule nd nd
rutABCDEFG_mRNA RutE
Name: rutABCDEFG_mRNA -> RutE
Description: Translation of RutE
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutE
Components:
Function Name Type Evidence Reference(s)
product RutE protein nd nd
reactant rutABCDEFG_mRNA RNA nd nd
RutE malonate-S-ald hydracrylic acid
Name: malonate-S-ald -> hydracrylic acid
Description: Reaction transforming malonate-S-ald into hydracrylic acid
Type: state transition
Pathway Components: malonate-S-ald - RutE -> hydracrylic acid
Components:
Function Name Type Evidence Reference(s)
catalyzer RutE protein nd nd
product hydracrylic acid simple_molecule nd nd
reactant malonate-S-ald simple_molecule nd nd
rutABCDEFG_mRNA RutF
Name: rutABCDEFG_mRNA -> RutF
Description: Translation of RutF
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutF
Components:
Function Name Type Evidence Reference(s)
product RutF protein nd nd
reactant rutABCDEFG_mRNA RNA nd nd
rutABCDEFG_mRNA RutG
Name: rutABCDEFG_mRNA -> RutG
Description: Translation of RutG
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutG
Components:
Function Name Type Evidence Reference(s)
product RutG protein nd nd
reactant rutABCDEFG_mRNA RNA nd nd
RutG uracil_Ext uracil
Name: uracil_Ext -> uracil
Description: Transport of uracil_Ext through a bacterial membrane, leading to the presence of uracil inside the cell.
Type: transport
Pathway Components: uracil_Ext - RutG -> uracil
Components:
Function Name Type Evidence Reference(s)
catalyzer RutG protein nd nd
product uracil simple_molecule nd nd
reactant uracil_Ext simple_molecule nd nd
rutR_mRNA RutR
Name: rutR_mRNA -> RutR
Description: Translation of RutR
Type: translation
Pathway Components: rutR_mRNA -> RutR
Components:
Function Name Type Evidence Reference(s)
product RutR protein nd nd
reactant rutR_mRNA RNA nd nd
pdeR_mRNA PdeR
Name: pdeR_mRNA -> PdeR
Description: Translation of PdeR
Type: translation
Pathway Components: pdeR_mRNA -> PdeR
Components:
Function Name Type Evidence Reference(s)
product PdeR protein nd nd
reactant pdeR_mRNA RNA nd nd
PdeR c-di-GMP 5'pGpG
Name: c-di-GMP -> 5'pGpG
Description: Reaction transforming c-di-GMP into 5'pGpG
Type: state transition
Pathway Components: c-di-GMP - PdeR -> 5'pGpG
Components:
Function Name Type Evidence Reference(s)
product 5'pGpG simple_molecule nd nd
catalyzer PdeR protein nd nd
reactant c-di-GMP simple_molecule nd nd
gadXW_mRNA GadX
Name: gadXW_mRNA -> GadX
Description: Translation of GadX
Type: translation
Pathway Components: gadXW_mRNA -> GadX
Components:
Function Name Type Evidence Reference(s)
product GadX protein nd nd
reactant gadXW_mRNA RNA nd nd
gadXW_mRNA GadW
Name: gadXW_mRNA -> GadW
Description: Translation of GadW
Type: translation
Pathway Components: gadXW_mRNA -> GadW
Components:
Function Name Type Evidence Reference(s)
product GadW protein nd nd
reactant gadXW_mRNA RNA nd nd
carAB_mRNA CarA
Name: carAB_mRNA -> CarA
Description: Translation of CarA
Type: translation
Pathway Components: carAB_mRNA -> CarA
Components:
Function Name Type Evidence Reference(s)
product CarA protein nd nd
reactant carAB_mRNA RNA nd nd
CarB + CarA CarB-CarA
Name: CarB + CarA -> CarB-CarA
Description: Reaction transforming CarB, CarA into CarB-CarA
Type: state transition
Pathway Components: CarB + CarA -> CarB-CarA
Components:
Function Name Type Evidence Reference(s)
reactant CarA protein nd nd
reactant CarB protein nd nd
product CarB-CarA complex nd nd
CarB-CarA ammonium glutamine + carbonate L-glutamate + carbamoyl-P + phosphate
Name: glutamine + carbonate -> L-glutamate + carbamoyl-P + phosphate
Description: Reaction transforming glutamine, carbonate into L-glutamate, carbamoyl-P , phosphate
Type: state transition
Pathway Components: glutamine + carbonate - CarB-CarA - ammonium -> L-glutamate + carbamoyl-P + phosphate
Components:
Function Name Type Evidence Reference(s)
catalyzer CarB-CarA complex nd nd
product L-glutamate simple_molecule nd nd
inhibitor ammonium simple_molecule nd nd
product carbamoyl-P simple_molecule nd nd
reactant carbonate simple_molecule nd nd
reactant glutamine simple_molecule nd nd
product phosphate simple_molecule nd nd
CarB-CarA L-glutamate glutamine L-glutamate + ammonium
Name: glutamine -> L-glutamate + ammonium
Description: Reaction transforming glutamine into L-glutamate, ammonium
Type: state transition
Pathway Components: glutamine - CarB-CarA - L-glutamate -> L-glutamate + ammonium
Components:
Function Name Type Evidence Reference(s)
catalyzer CarB-CarA complex nd nd
inhibitor L-glutamate simple_molecule nd nd
product L-glutamate simple_molecule nd nd
product ammonium simple_molecule nd nd
reactant glutamine simple_molecule nd nd
CarB-CarA carbonate + ammonium carbamoyl-P + phosphate
Name: carbonate + ammonium -> carbamoyl-P + phosphate
Description: Reaction transforming carbonate, ammonium into carbamoyl-P, phosphate
Type: state transition
Pathway Components: carbonate + ammonium - CarB-CarA -> carbamoyl-P + phosphate
Components:
Function Name Type Evidence Reference(s)
catalyzer CarB-CarA complex nd nd
reactant ammonium simple_molecule nd nd
product carbamoyl-P simple_molecule nd nd
reactant carbonate simple_molecule nd nd
product phosphate simple_molecule nd nd
carAB_mRNA CarB
Name: carAB_mRNA -> CarB
Description: Translation of CarB
Type: translation
Pathway Components: carAB_mRNA -> CarB
Components:
Function Name Type Evidence Reference(s)
product CarB protein nd nd
reactant carAB_mRNA RNA nd nd



RegulonDB