RegulonDB RegulonDB

RtcR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          


Gensor Unit       
Name: RtcR
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0003824 - catalytic activity
GO:0008452 - RNA ligase activity
GO:0005737 - cytoplasm
GO:0042245 - RNA repair
GO:0006396 - RNA processing
GO:0003963 - RNA-3'-phosphate cyclase activity
GO:0003909 - DNA ligase activity
GO:0046872 - metal ion binding
GO:0000166 - nucleotide binding
GO:0030145 - manganese ion binding
GO:0005524 - ATP binding
Read more >
Components:
Function Name Type
simple molecule |Cyclic-Phosphate-Terminated-RNAs| simple molecule


Reactions       
Showing 6 reactions
rtcBA rtcBA_mRNA
Name: rtcBA -> rtcBA_mRNA
Description: Transcription of transcription unit rtcBA; reaction activation by RtcR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product rtcBA_mRNA RNA nd nd
reactant rtcBA gene nd nd
rtcBA_mRNA RtcB
Name: rtcBA_mRNA -> RtcB
Description: Translation of RtcB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant rtcBA_mRNA RNA nd nd
product RtcB protein nd nd
|Cyclic-Phosphate-Terminated-RNAs| + a 5′-hydroxyl terminated RNA + GTP a ligated RNA + GMP + PP
Name: |Cyclic-Phosphate-Terminated-RNAs| + a 5′-hydroxyl terminated RNA + GTP -> a ligated RNA + GMP + PP
Description: Reaction transforming |Cyclic-Phosphate-Terminated-RNAs|, a 5′-hydroxyl terminated RNA, GTP into a ligated RNA, GMP , PP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a 5′-hydroxyl terminated RNA simple molecule nd nd
product PP simple molecule nd nd
product a ligated RNA simple molecule nd nd
reactant |Cyclic-Phosphate-Terminated-RNAs| simple molecule nd nd
reactant GTP simple molecule nd nd
product GMP simple molecule nd nd
rtcBA_mRNA RtcA
Name: rtcBA_mRNA -> RtcA
Description: Translation of RtcA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant rtcBA_mRNA RNA nd nd
product RtcA protein nd nd
|3-Prime-Phosphate-Terminated-RNAs| |Cyclic-Phosphate-Terminated-RNAs| + PP
Name: |3-Prime-Phosphate-Terminated-RNAs| -> |Cyclic-Phosphate-Terminated-RNAs| + PP
Description: Reaction transforming |3-Prime-Phosphate-Terminated-RNAs| into |Cyclic-Phosphate-Terminated-RNAs|, PP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant |3-Prime-Phosphate-Terminated-RNAs| simple molecule nd nd
product PP simple molecule nd nd
product |Cyclic-Phosphate-Terminated-RNAs| simple molecule nd nd
a 5′-phosphopolynucleotide a 5′ adenylylated polynucleotide + PP
Name: a 5′-phosphopolynucleotide -> a 5′ adenylylated polynucleotide + PP
Description: Reaction transforming a 5′-phosphopolynucleotide into a 5′ adenylylated polynucleotide, PP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a 5′ adenylylated polynucleotide simple molecule nd nd
reactant a 5′-phosphopolynucleotide simple molecule nd nd
product PP simple molecule nd nd



RegulonDB