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Rob Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
L-malate 5,6,7,8-tetrahydropteridine 6,7-dihydropteridine 6-phosphogluconolactone AP site removed from DNA AcnA AcrA AcrB AcrD AcrE AcrF AcrZ AslB D-ala I-CIT EmrA EmrB EmrK EmrY EntS FumC InaA L-glutamate MacA MacB MarA MarB MarR MdtA MdtB MdtC MdtE MdtF This Gensor Unit is not yet available MltF Nfo NfsA NfsB RimK Rob SodA TolC YbiS YbjC YbjN YgiA YgiB YgiC Zwf a [protein] alpha-L-glu-alpha-L-glu a [protein] alpha-L-glutamate a drug a drug_Ext a macrolide antibiotic a macrolide antibiotic_Ext a peptidoglycan polymer a peptidoglycan polymer with 1,6-anhydromuropeptide end a peptidoglycan polymer with GlcNAc end a reduced nitroaromatic compound acnA acnA_mRNA acrAB acrAB_mRNA acrZ acrZ_mRNA an AP(apurinic or apyrimidinic) site created by glycosylic bond cleavage an oxidized nitroaromatic compound aslB aslB_mRNA beta-D-glucose-6-P cis-aconitate cit enterobactin enterobactin_Ext This Gensor Unit is not yet available This Gensor Unit is not yet available fumarate perhydrol inaA inaA_mRNA marRAB marRAB_mRNA micF micF_mRNA mltF mltF_mRNA Lpp nfo nfo_mRNA nfsB nfsB_mRNA oxygen peptidoglycan tetrapeptide, glycan chain 1 peptidoglycan tripeptide-Lpp crosslink phosphate rob rob_mRNA sodA sodA_mRNA superoxide tolC-ygiABC tolC-ygiABC_mRNA This Gensor Unit is not yet available This Gensor Unit is not yet available ybjC-nfsA-rimK-ybjN ybjC-nfsA-rimK-ybjN_mRNA zwf zwf_mRNA AcrA TolC AcrB AcrD AcrA TolC TolC MacB MacA TolC MdtE MdtF AcrE AcrF TolC EmrA EmrB TolC EmrK EmrY TolC EntS TolC TolC MdtC MdtB MdtA oxalacetate


Gensor Unit       
Name: Rob
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0046256 - 2,4,6-trinitrotoluene catabolic process
GO:0018410 - C-terminal protein amino acid modification
GO:0043164 - Gram-negative-bacterium-type cell wall biogenesis
GO:0009432 - SOS response
GO:0009061 - anaerobic respiration
GO:0006284 - base-excision repair
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cellular_component GO:0009279 - cell outer membrane
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:1990281 - efflux pump complex
GO:0005887 - integral component of plasma membrane
GO:0031226 - intrinsic component of plasma membrane
GO:0016020 - membrane
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molecular_function GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0004155 - 6,7-dihydropteridine reductase activity
GO:0003677 - DNA binding
GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity
GO:0010181 - FMN binding
GO:0018545 - NAD(P)H nitroreductase activity
GO:0050661 - NADP binding
Read more >
Components: Show/Hide Components Table (123 more...)
Function Name Type
simple_molecule 5'-phosphooligonucleotide simple_molecule
simple_molecule 6,7-dihydropteridine simple_molecule
simple_molecule 6-phosphogluconolactone simple_molecule
protein AcnA protein
protein AcrA protein
complex AcrA-TolC-AcrB complex
protein AcrB protein
protein AcrD protein
complex AcrD-AcrA-TolC complex
protein AcrE protein
complex AcrE-AcrF-TolC complex
protein AcrF protein
protein AcrZ protein
protein AslB protein
protein EmrA protein
complex EmrA-EmrB-TolC complex
protein EmrB protein
protein EmrK protein
complex EmrK-EmrY-TolC complex
protein EmrY protein
protein EntS protein
complex EntS-TolC complex
protein FumC protein
simple_molecule GlcNAc-1,6-anhydro-MurNAc-pentapeptide simple_molecule
simple_molecule I-CIT simple_molecule
protein InaA protein
simple_molecule L-glutamate simple_molecule
protein LdtB protein
protein MacA protein
protein MacB protein
protein MarA protein
protein MarB protein
protein MarR protein
protein MdtA protein
protein MdtB protein
protein MdtC protein
protein MdtE protein
protein MdtF protein
simple_molecule MlpA simple_molecule
protein MltF protein
protein Nfo protein
protein NfsA protein
protein NfsB protein
protein RNA:MicF protein
protein RimK protein
protein Rob protein
protein SodA protein
protein TolC protein
complex TolC-MacB-MacA complex
complex TolC-MdtC-MdtB-MdtA complex
complex TolC-MdtE-MdtF complex
protein YbjC protein
protein YbjN protein
protein YgiA protein
protein YgiB protein
protein YgiC protein
protein Zwf protein
simple_molecule [protein] α-L-glu-α-L-glu simple_molecule
simple_molecule [protein] C-terminal L-glutamate simple_molecule
gene acnA gene
RNA acnA_mRNA RNA
gene acrAB gene
RNA acrAB_mRNA RNA
gene acrZ gene
RNA acrZ_mRNA RNA
simple_molecule ala simple_molecule
gene aslB gene
RNA aslB_mRNA RNA
simple_molecule chenodiol simple_molecule
simple_molecule chenodiol_Ext simple_molecule
simple_molecule cis-aconitate simple_molecule
simple_molecule citrate simple_molecule
simple_molecule drug simple_molecule
simple_molecule drug_Ext simple_molecule
simple_molecule enterobactin simple_molecule
simple_molecule enterobactin_Ext simple_molecule
gene fumC gene
RNA fumC_mRNA RNA
simple_molecule fumarate simple_molecule
simple_molecule glucose-6-P simple_molecule
simple_molecule glycine simple_molecule
gene inaA gene
RNA inaA_mRNA RNA
gene ldtB gene
RNA ldtB_mRNA RNA
simple_molecule lipid II simple_molecule
simple_molecule macrolide antibiotic simple_molecule
simple_molecule macrolide antibiotic_Ext simple_molecule
simple_molecule malate simple_molecule
gene marRAB gene
RNA marRAB_mRNA RNA
gene micF gene
RNA micF_mRNA RNA
gene mltF gene
RNA mltF_mRNA RNA
simple_molecule nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide simple_molecule
simple_molecule nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide simple_molecule
simple_molecule nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide simple_molecule
gene nfo gene
RNA nfo_mRNA RNA
gene nfsB gene
RNA nfsB_mRNA RNA
simple_molecule oxidized nitroaromatic compound simple_molecule
simple_molecule oxygen simple_molecule
simple_molecule peptidoglycan dimer (generic) simple_molecule
simple_molecule peptidoglycan tripeptide-Lpp crosslink simple_molecule
simple_molecule peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide simple_molecule
simple_molecule perhydrol simple_molecule
simple_molecule phosphate simple_molecule
simple_molecule reduced nitroaromatic compound simple_molecule
gene rob gene
RNA rob_mRNA RNA
simple_molecule single stranded DNA simple_molecule
gene sodA gene
RNA sodA_mRNA RNA
simple_molecule superoxide simple_molecule
simple_molecule tetrahydropteridine simple_molecule
gene tolC-ygiABC gene
RNA tolC-ygiABC_mRNA RNA
gene ybjC-nfsA-rimK-ybjN gene
RNA ybjC-nfsA-rimK-ybjN_mRNA RNA
gene zwf gene
RNA zwf_mRNA RNA


Reactions       
Showing 72 reactions
Rob acnA acnA_mRNA
Name: acnA -> acnA_mRNA
Description: Transcription of transcription unit acnA. Reaction activation by Rob.
Type: transcription
Pathway Components: acnA - Rob -> acnA_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant acnA gene nd nd
product acnA_mRNA RNA nd nd
Rob acrAB acrAB_mRNA
Name: acrAB -> acrAB_mRNA
Description: Transcription of transcription unit acrAB. Reaction activation by Rob.
Type: transcription
Pathway Components: acrAB - Rob -> acrAB_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant acrAB gene nd nd
product acrAB_mRNA RNA nd nd
Rob acrZ acrZ_mRNA
Name: acrZ -> acrZ_mRNA
Description: Transcription of transcription unit acrZ. Reaction activation by Rob.
Type: transcription
Pathway Components: acrZ - Rob -> acrZ_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant acrZ gene nd nd
product acrZ_mRNA RNA nd nd
Rob aslB aslB_mRNA
Name: aslB -> aslB_mRNA
Description: Transcription of transcription unit aslB. Reaction activation by Rob.
Type: transcription
Pathway Components: aslB - Rob -> aslB_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant aslB gene nd nd
product aslB_mRNA RNA nd nd
Rob fumC fumC_mRNA
Name: fumC -> fumC_mRNA
Description: Transcription of transcription unit fumC. Reaction activation by Rob.
Type: transcription
Pathway Components: fumC - Rob -> fumC_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant fumC gene nd nd
product fumC_mRNA RNA nd nd
Rob inaA inaA_mRNA
Name: inaA -> inaA_mRNA
Description: Transcription of transcription unit inaA. Reaction activation by Rob.
Type: transcription
Pathway Components: inaA - Rob -> inaA_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant inaA gene nd nd
product inaA_mRNA RNA nd nd
Rob ldtB ldtB_mRNA
Name: ldtB -> ldtB_mRNA
Description: Transcription of transcription unit ldtB. Reaction activation by Rob.
Type: transcription
Pathway Components: ldtB - Rob -> ldtB_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant ldtB gene nd nd
product ldtB_mRNA RNA nd nd
Rob marRAB marRAB_mRNA
Name: marRAB -> marRAB_mRNA
Description: Transcription of transcription unit marRAB. Reaction activation by Rob.
Type: transcription
Pathway Components: marRAB - Rob -> marRAB_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant marRAB gene nd nd
product marRAB_mRNA RNA nd nd
Rob micF micF_mRNA
Name: micF -> micF_mRNA
Description: Transcription of transcription unit micF. Reaction activation by Rob.
Type: transcription
Pathway Components: micF - Rob -> micF_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant micF gene nd nd
product micF_mRNA RNA nd nd
Rob mltF mltF_mRNA
Name: mltF -> mltF_mRNA
Description: Transcription of transcription unit mltF. Reaction activation by Rob.
Type: transcription
Pathway Components: mltF - Rob -> mltF_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant mltF gene nd nd
product mltF_mRNA RNA nd nd
Rob nfo nfo_mRNA
Name: nfo -> nfo_mRNA
Description: Transcription of transcription unit nfo. Reaction activation by Rob.
Type: transcription
Pathway Components: nfo - Rob -> nfo_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant nfo gene nd nd
product nfo_mRNA RNA nd nd
Rob nfsB nfsB_mRNA
Name: nfsB -> nfsB_mRNA
Description: Transcription of transcription unit nfsB. Reaction activation by Rob.
Type: transcription
Pathway Components: nfsB - Rob -> nfsB_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant nfsB gene nd nd
product nfsB_mRNA RNA nd nd
Rob rob rob_mRNA
Name: rob -> rob_mRNA
Description: Transcription of transcription unit rob. Reaction inhibition by Rob.
Type: transcription
Pathway Components: rob - Rob -> rob_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor Rob protein nd nd
reactant rob gene nd nd
product rob_mRNA RNA nd nd
Rob sodA sodA_mRNA
Name: sodA -> sodA_mRNA
Description: Transcription of transcription unit sodA. Reaction activation by Rob.
Type: transcription
Pathway Components: sodA - Rob -> sodA_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant sodA gene nd nd
product sodA_mRNA RNA nd nd
Rob tolC-ygiABC tolC-ygiABC_mRNA
Name: tolC-ygiABC -> tolC-ygiABC_mRNA
Description: Transcription of transcription unit tolC-ygiABC. Reaction activation by Rob.
Type: transcription
Pathway Components: tolC-ygiABC - Rob -> tolC-ygiABC_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant tolC-ygiABC gene nd nd
product tolC-ygiABC_mRNA RNA nd nd
Rob ybjC-nfsA-rimK-ybjN ybjC-nfsA-rimK-ybjN_mRNA
Name: ybjC-nfsA-rimK-ybjN -> ybjC-nfsA-rimK-ybjN_mRNA
Description: Transcription of transcription unit ybjC-nfsA-rimK-ybjN. Reaction activation by Rob.
Type: transcription
Pathway Components: ybjC-nfsA-rimK-ybjN - Rob -> ybjC-nfsA-rimK-ybjN_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant ybjC-nfsA-rimK-ybjN gene nd nd
product ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
Rob zwf zwf_mRNA
Name: zwf -> zwf_mRNA
Description: Transcription of transcription unit zwf. Reaction activation by Rob.
Type: transcription
Pathway Components: zwf - Rob -> zwf_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Rob protein nd nd
reactant zwf gene nd nd
product zwf_mRNA RNA nd nd
marRAB_mRNA MarR
Name: marRAB_mRNA -> MarR
Description: Translation of MarR
Type: translation
Pathway Components: marRAB_mRNA -> MarR
Components:
Function Name Type Evidence Reference(s)
product MarR protein nd nd
reactant marRAB_mRNA RNA nd nd
marRAB_mRNA MarA
Name: marRAB_mRNA -> MarA
Description: Translation of MarA
Type: translation
Pathway Components: marRAB_mRNA -> MarA
Components:
Function Name Type Evidence Reference(s)
product MarA protein nd nd
reactant marRAB_mRNA RNA nd nd
marRAB_mRNA MarB
Name: marRAB_mRNA -> MarB
Description: Translation of MarB
Type: translation
Pathway Components: marRAB_mRNA -> MarB
Components:
Function Name Type Evidence Reference(s)
product MarB protein nd nd
reactant marRAB_mRNA RNA nd nd
ldtB_mRNA LdtB
Name: ldtB_mRNA -> LdtB
Description: Translation of LdtB
Type: translation
Pathway Components: ldtB_mRNA -> LdtB
Components:
Function Name Type Evidence Reference(s)
product LdtB protein nd nd
reactant ldtB_mRNA RNA nd nd
LdtB Reactants Products
Name: nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide + glycine -> nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide + ala
Description: Reaction transforming nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide, glycine into nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide, ala
Type: state transition
Pathway Components: nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide + glycine - LdtB -> nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide + ala
Components:
Function Name Type Evidence Reference(s)
catalyzer LdtB protein nd nd
product ala simple_molecule nd nd
reactant glycine simple_molecule nd nd
reactant nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide simple_molecule nd nd
product nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide simple_molecule nd nd
LdtB Reactants Products
Name: nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide -> nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide + ala
Description: Reaction transforming nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide into nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide, ala
Type: state transition
Pathway Components: nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide - LdtB -> nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide + ala
Components:
Function Name Type Evidence Reference(s)
catalyzer LdtB protein nd nd
product ala simple_molecule nd nd
product nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide simple_molecule nd nd
reactant nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide simple_molecule nd nd
LdtB Reactants peptidoglycan tripeptide-Lpp crosslink + ala
Name: peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide + MlpA -> peptidoglycan tripeptide-Lpp crosslink + ala
Description: Reaction transforming peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide, MlpA into peptidoglycan tripeptide-Lpp crosslink, ala
Type: state transition
Pathway Components: peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide + MlpA - LdtB -> peptidoglycan tripeptide-Lpp crosslink + ala
Components:
Function Name Type Evidence Reference(s)
catalyzer LdtB protein nd nd
reactant MlpA simple_molecule nd nd
product ala simple_molecule nd nd
product peptidoglycan tripeptide-Lpp crosslink simple_molecule nd nd
reactant peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide simple_molecule nd nd
nfo_mRNA Nfo
Name: nfo_mRNA -> Nfo
Description: Translation of Nfo
Type: translation
Pathway Components: nfo_mRNA -> Nfo
Components:
Function Name Type Evidence Reference(s)
product Nfo protein nd nd
reactant nfo_mRNA RNA nd nd
Nfo single stranded DNA 5'-phosphooligonucleotide
Name: single stranded DNA -> 5'-phosphooligonucleotide
Description: Reaction transforming single stranded DNA into 5'-phosphooligonucleotide
Type: state transition
Pathway Components: single stranded DNA - Nfo -> 5'-phosphooligonucleotide
Components:
Function Name Type Evidence Reference(s)
product 5'-phosphooligonucleotide simple_molecule nd nd
catalyzer Nfo protein nd nd
reactant single stranded DNA simple_molecule nd nd
zwf_mRNA Zwf
Name: zwf_mRNA -> Zwf
Description: Translation of Zwf
Type: translation
Pathway Components: zwf_mRNA -> Zwf
Components:
Function Name Type Evidence Reference(s)
product Zwf protein nd nd
reactant zwf_mRNA RNA nd nd
Zwf glucose-6-P 6-phosphogluconolactone
Name: glucose-6-P -> 6-phosphogluconolactone
Description: Reaction transforming glucose-6-P into 6-phosphogluconolactone
Type: state transition
Pathway Components: glucose-6-P - Zwf -> 6-phosphogluconolactone
Components:
Function Name Type Evidence Reference(s)
product 6-phosphogluconolactone simple_molecule nd nd
catalyzer Zwf protein nd nd
reactant glucose-6-P simple_molecule nd nd
nfsB_mRNA NfsB
Name: nfsB_mRNA -> NfsB
Description: Translation of NfsB
Type: translation
Pathway Components: nfsB_mRNA -> NfsB
Components:
Function Name Type Evidence Reference(s)
product NfsB protein nd nd
reactant nfsB_mRNA RNA nd nd
NfsA NfsB oxidized nitroaromatic compound reduced nitroaromatic compound
Name: oxidized nitroaromatic compound -> reduced nitroaromatic compound
Description: Reaction transforming oxidized nitroaromatic compound into reduced nitroaromatic compound
Type: state transition
Pathway Components: oxidized nitroaromatic compound - NfsA - NfsB -> reduced nitroaromatic compound
Components:
Function Name Type Evidence Reference(s)
catalyzer NfsA protein nd nd
catalyzer NfsB protein nd nd
reactant oxidized nitroaromatic compound simple_molecule nd nd
product reduced nitroaromatic compound simple_molecule nd nd
NfsB tetrahydropteridine 6,7-dihydropteridine
Name: tetrahydropteridine -> 6,7-dihydropteridine
Description: Reaction transforming tetrahydropteridine into 6,7-dihydropteridine
Type: state transition
Pathway Components: tetrahydropteridine - NfsB -> 6,7-dihydropteridine
Components:
Function Name Type Evidence Reference(s)
product 6,7-dihydropteridine simple_molecule nd nd
catalyzer NfsB protein nd nd
reactant tetrahydropteridine simple_molecule nd nd
rob_mRNA Rob
Name: rob_mRNA -> Rob
Description: Translation of Rob
Type: translation
Pathway Components: rob_mRNA -> Rob
Components:
Function Name Type Evidence Reference(s)
product Rob protein nd nd
reactant rob_mRNA RNA nd nd
inaA_mRNA InaA
Name: inaA_mRNA -> InaA
Description: Translation of InaA
Type: translation
Pathway Components: inaA_mRNA -> InaA
Components:
Function Name Type Evidence Reference(s)
product InaA protein nd nd
reactant inaA_mRNA RNA nd nd
acrZ_mRNA AcrZ
Name: acrZ_mRNA -> AcrZ
Description: Translation of AcrZ
Type: translation
Pathway Components: acrZ_mRNA -> AcrZ
Components:
Function Name Type Evidence Reference(s)
product AcrZ protein nd nd
reactant acrZ_mRNA RNA nd nd
ybjC-nfsA-rimK-ybjN_mRNA YbjC
Name: ybjC-nfsA-rimK-ybjN_mRNA -> YbjC
Description: Translation of YbjC
Type: translation
Pathway Components: ybjC-nfsA-rimK-ybjN_mRNA -> YbjC
Components:
Function Name Type Evidence Reference(s)
product YbjC protein nd nd
reactant ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
ybjC-nfsA-rimK-ybjN_mRNA NfsA
Name: ybjC-nfsA-rimK-ybjN_mRNA -> NfsA
Description: Translation of NfsA
Type: translation
Pathway Components: ybjC-nfsA-rimK-ybjN_mRNA -> NfsA
Components:
Function Name Type Evidence Reference(s)
product NfsA protein nd nd
reactant ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
ybjC-nfsA-rimK-ybjN_mRNA RimK
Name: ybjC-nfsA-rimK-ybjN_mRNA -> RimK
Description: Translation of RimK
Type: translation
Pathway Components: ybjC-nfsA-rimK-ybjN_mRNA -> RimK
Components:
Function Name Type Evidence Reference(s)
product RimK protein nd nd
reactant ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
RimK [protein] C-terminal L-glutamate + L-glutamate [protein] α-L-glu-α-L-glu + phosphate
Name: [protein] C-terminal L-glutamate + L-glutamate -> [protein] α-L-glu-α-L-glu + phosphate
Description: Reaction transforming [protein] C-terminal L-glutamate, L-glutamate into [protein] α-L-glu-α-L-glu, phosphate
Type: state transition
Pathway Components: [protein] C-terminal L-glutamate + L-glutamate - RimK -> [protein] α-L-glu-α-L-glu + phosphate
Components:
Function Name Type Evidence Reference(s)
reactant L-glutamate simple_molecule nd nd
catalyzer RimK protein nd nd
product [protein] α-L-glu-α-L-glu simple_molecule nd nd
reactant [protein] C-terminal L-glutamate simple_molecule nd nd
product phosphate simple_molecule nd nd
ybjC-nfsA-rimK-ybjN_mRNA YbjN
Name: ybjC-nfsA-rimK-ybjN_mRNA -> YbjN
Description: Translation of YbjN
Type: translation
Pathway Components: ybjC-nfsA-rimK-ybjN_mRNA -> YbjN
Components:
Function Name Type Evidence Reference(s)
product YbjN protein nd nd
reactant ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
micF_mRNA RNA:MicF
Name: micF_mRNA -> RNA:MicF
Description: Translation of RNA:MicF
Type: translation
Pathway Components: micF_mRNA -> RNA:MicF
Components:
Function Name Type Evidence Reference(s)
product RNA:MicF protein nd nd
reactant micF_mRNA RNA nd nd
sodA_mRNA SodA
Name: sodA_mRNA -> SodA
Description: Translation of SodA
Type: translation
Pathway Components: sodA_mRNA -> SodA
Components:
Function Name Type Evidence Reference(s)
product SodA protein nd nd
reactant sodA_mRNA RNA nd nd
SodA perhydrol superoxide perhydrol + oxygen
Name: superoxide -> perhydrol + oxygen
Description: Reaction transforming superoxide into perhydrol, oxygen
Type: state transition
Pathway Components: superoxide - SodA - perhydrol -> perhydrol + oxygen
Components:
Function Name Type Evidence Reference(s)
catalyzer SodA protein nd nd
product oxygen simple_molecule nd nd
inhibitor perhydrol simple_molecule nd nd
product perhydrol simple_molecule nd nd
reactant superoxide simple_molecule nd nd
mltF_mRNA MltF
Name: mltF_mRNA -> MltF
Description: Translation of MltF
Type: translation
Pathway Components: mltF_mRNA -> MltF
Components:
Function Name Type Evidence Reference(s)
product MltF protein nd nd
reactant mltF_mRNA RNA nd nd
MltF peptidoglycan dimer (generic) GlcNAc-1,6-anhydro-MurNAc-pentapeptide + lipid II
Name: peptidoglycan dimer (generic) -> GlcNAc-1,6-anhydro-MurNAc-pentapeptide + lipid II
Description: Reaction transforming peptidoglycan dimer (generic) into GlcNAc-1,6-anhydro-MurNAc-pentapeptide, lipid II
Type: state transition
Pathway Components: peptidoglycan dimer (generic) - MltF -> GlcNAc-1,6-anhydro-MurNAc-pentapeptide + lipid II
Components:
Function Name Type Evidence Reference(s)
product GlcNAc-1,6-anhydro-MurNAc-pentapeptide simple_molecule nd nd
catalyzer MltF protein nd nd
product lipid II simple_molecule nd nd
reactant peptidoglycan dimer (generic) simple_molecule nd nd
acnA_mRNA AcnA
Name: acnA_mRNA -> AcnA
Description: Translation of AcnA
Type: translation
Pathway Components: acnA_mRNA -> AcnA
Components:
Function Name Type Evidence Reference(s)
product AcnA protein nd nd
reactant acnA_mRNA RNA nd nd
AcnA cis-aconitate I-CIT
Name: cis-aconitate -> I-CIT
Description: Reaction transforming cis-aconitate into I-CIT
Type: state transition
Pathway Components: cis-aconitate - AcnA -> I-CIT
Components:
Function Name Type Evidence Reference(s)
catalyzer AcnA protein nd nd
product I-CIT simple_molecule nd nd
reactant cis-aconitate simple_molecule nd nd
AcnA citrate cis-aconitate
Name: citrate -> cis-aconitate
Description: Reaction transforming citrate into cis-aconitate
Type: state transition
Pathway Components: citrate - AcnA -> cis-aconitate
Components:
Function Name Type Evidence Reference(s)
catalyzer AcnA protein nd nd
product cis-aconitate simple_molecule nd nd
reactant citrate simple_molecule nd nd
tolC-ygiABC_mRNA TolC
Name: tolC-ygiABC_mRNA -> TolC
Description: Translation of TolC
Type: translation
Pathway Components: tolC-ygiABC_mRNA -> TolC
Components:
Function Name Type Evidence Reference(s)
product TolC protein nd nd
reactant tolC-ygiABC_mRNA RNA nd nd
MdtC + MdtA + MdtB + TolC TolC-MdtC-MdtB-MdtA
Name: MdtC + MdtA + MdtB + TolC -> TolC-MdtC-MdtB-MdtA
Description: Reaction transforming MdtC, MdtA, MdtB, TolC into TolC-MdtC-MdtB-MdtA
Type: state transition
Pathway Components: MdtC + MdtA + MdtB + TolC -> TolC-MdtC-MdtB-MdtA
Components:
Function Name Type Evidence Reference(s)
reactant MdtA protein nd nd
reactant MdtB protein nd nd
reactant MdtC protein nd nd
reactant TolC protein nd nd
product TolC-MdtC-MdtB-MdtA complex nd nd
AcrA-TolC-AcrB AcrD-AcrA-TolC AcrE-AcrF-TolC EmrA-EmrB-TolC EmrK-EmrY-TolC TolC-MdtC-MdtB-MdtA TolC-MdtE-MdtF drug_Ext drug
Name: drug_Ext -> drug
Description: Transport of drug_Ext through a bacterial membrane, leading to the presence of drug inside the cell.
Type: transport
Pathway Components: drug_Ext - AcrA-TolC-AcrB - AcrD-AcrA-TolC - AcrE-AcrF-TolC - EmrA-EmrB-TolC - EmrK-EmrY-TolC - TolC-MdtC-MdtB-MdtA - TolC-MdtE-MdtF -> drug
Components: Show/Hide Components Table
EntS + TolC EntS-TolC
Name: EntS + TolC -> EntS-TolC
Description: Reaction transforming EntS, TolC into EntS-TolC
Type: state transition
Pathway Components: EntS + TolC -> EntS-TolC
Components:
Function Name Type Evidence Reference(s)
reactant EntS protein nd nd
product EntS-TolC complex nd nd
reactant TolC protein nd nd
EntS-TolC enterobactin_Ext enterobactin
Name: enterobactin_Ext -> enterobactin
Description: Transport of enterobactin_Ext through a bacterial membrane, leading to the presence of enterobactin inside the cell.
Type: transport
Pathway Components: enterobactin_Ext - EntS-TolC -> enterobactin
Components:
Function Name Type Evidence Reference(s)
catalyzer EntS-TolC complex nd nd
product enterobactin simple_molecule nd nd
reactant enterobactin_Ext simple_molecule nd nd
EmrK + TolC + EmrY EmrK-EmrY-TolC
Name: EmrK + TolC + EmrY -> EmrK-EmrY-TolC
Description: Reaction transforming EmrK, TolC, EmrY into EmrK-EmrY-TolC
Type: state transition
Pathway Components: EmrK + TolC + EmrY -> EmrK-EmrY-TolC
Components:
Function Name Type Evidence Reference(s)
reactant EmrK protein nd nd
product EmrK-EmrY-TolC complex nd nd
reactant EmrY protein nd nd
reactant TolC protein nd nd
EmrB + TolC + EmrA EmrA-EmrB-TolC
Name: EmrB + TolC + EmrA -> EmrA-EmrB-TolC
Description: Reaction transforming EmrB, TolC, EmrA into EmrA-EmrB-TolC
Type: state transition
Pathway Components: EmrB + TolC + EmrA -> EmrA-EmrB-TolC
Components:
Function Name Type Evidence Reference(s)
reactant EmrA protein nd nd
product EmrA-EmrB-TolC complex nd nd
reactant EmrB protein nd nd
reactant TolC protein nd nd
AcrF + TolC + AcrE AcrE-AcrF-TolC
Name: AcrF + TolC + AcrE -> AcrE-AcrF-TolC
Description: Reaction transforming AcrF, TolC, AcrE into AcrE-AcrF-TolC
Type: state transition
Pathway Components: AcrF + TolC + AcrE -> AcrE-AcrF-TolC
Components:
Function Name Type Evidence Reference(s)
reactant AcrE protein nd nd
product AcrE-AcrF-TolC complex nd nd
reactant AcrF protein nd nd
reactant TolC protein nd nd
AcrD + AcrA + TolC AcrD-AcrA-TolC
Name: AcrD + AcrA + TolC -> AcrD-AcrA-TolC
Description: Reaction transforming AcrD, AcrA, TolC into AcrD-AcrA-TolC
Type: state transition
Pathway Components: AcrD + AcrA + TolC -> AcrD-AcrA-TolC
Components:
Function Name Type Evidence Reference(s)
reactant AcrA protein nd nd
reactant AcrD protein nd nd
product AcrD-AcrA-TolC complex nd nd
reactant TolC protein nd nd
AcrB + AcrA + TolC AcrA-TolC-AcrB
Name: AcrB + AcrA + TolC -> AcrA-TolC-AcrB
Description: Reaction transforming AcrB, AcrA, TolC into AcrA-TolC-AcrB
Type: state transition
Pathway Components: AcrB + AcrA + TolC -> AcrA-TolC-AcrB
Components:
Function Name Type Evidence Reference(s)
reactant AcrA protein nd nd
product AcrA-TolC-AcrB complex nd nd
reactant AcrB protein nd nd
reactant TolC protein nd nd
AcrA-TolC-AcrB chenodiol_Ext chenodiol
Name: chenodiol_Ext -> chenodiol
Description: Transport of chenodiol_Ext through a bacterial membrane, leading to the presence of chenodiol inside the cell.
Type: transport
Pathway Components: chenodiol_Ext - AcrA-TolC-AcrB -> chenodiol
Components:
Function Name Type Evidence Reference(s)
catalyzer AcrA-TolC-AcrB complex nd nd
product chenodiol simple_molecule nd nd
reactant chenodiol_Ext simple_molecule nd nd
MdtF + MdtE + TolC TolC-MdtE-MdtF
Name: MdtF + MdtE + TolC -> TolC-MdtE-MdtF
Description: Reaction transforming MdtF, MdtE, TolC into TolC-MdtE-MdtF
Type: state transition
Pathway Components: MdtF + MdtE + TolC -> TolC-MdtE-MdtF
Components:
Function Name Type Evidence Reference(s)
reactant MdtE protein nd nd
reactant MdtF protein nd nd
reactant TolC protein nd nd
product TolC-MdtE-MdtF complex nd nd
MacA + MacB + TolC TolC-MacB-MacA
Name: MacA + MacB + TolC -> TolC-MacB-MacA
Description: Reaction transforming MacA, MacB, TolC into TolC-MacB-MacA
Type: state transition
Pathway Components: MacA + MacB + TolC -> TolC-MacB-MacA
Components:
Function Name Type Evidence Reference(s)
reactant MacA protein nd nd
reactant MacB protein nd nd
reactant TolC protein nd nd
product TolC-MacB-MacA complex nd nd
TolC-MacB-MacA macrolide antibiotic_Ext macrolide antibiotic
Name: macrolide antibiotic_Ext -> macrolide antibiotic
Description: Transport of macrolide antibiotic_Ext through a bacterial membrane, leading to the presence of macrolide antibiotic inside the cell.
Type: transport
Pathway Components: macrolide antibiotic_Ext - TolC-MacB-MacA -> macrolide antibiotic
Components:
Function Name Type Evidence Reference(s)
catalyzer TolC-MacB-MacA complex nd nd
product macrolide antibiotic simple_molecule nd nd
reactant macrolide antibiotic_Ext simple_molecule nd nd
tolC-ygiABC_mRNA YgiA
Name: tolC-ygiABC_mRNA -> YgiA
Description: Translation of YgiA
Type: translation
Pathway Components: tolC-ygiABC_mRNA -> YgiA