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Rob Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          


Gensor Unit       
Name: Rob
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0045892 - negative regulation of transcription, DNA-templated
GO:0043164 - Gram-negative-bacterium-type cell wall biogenesis
GO:0008270 - zinc ion binding
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0003824 - catalytic activity
GO:0008360 - regulation of cell shape
GO:0005622 - intracellular
GO:0006099 - tricarboxylic acid cycle
GO:0006801 - superoxide metabolic process
GO:0010181 - FMN binding
GO:0016020 - membrane
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Components:
Function Name Type
simple molecule oxalacetate simple molecule


Reactions       
Showing 68 reactions
acnA acnA_mRNA
Name: acnA -> acnA_mRNA
Description: Transcription of transcription unit acnA; reaction activation by Cra.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product acnA_mRNA RNA nd nd
reactant acnA gene nd nd
acrAB acrAB_mRNA
Name: acrAB -> acrAB_mRNA
Description: Transcription of transcription unit acrAB; reaction inhibition by AcrR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant acrAB gene nd nd
product acrAB_mRNA RNA nd nd
acrZ acrZ_mRNA
Name: acrZ -> acrZ_mRNA
Description: Transcription of transcription unit acrZ; reaction activation by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product acrZ_mRNA RNA nd nd
reactant acrZ gene nd nd
aslB aslB_mRNA
Name: aslB -> aslB_mRNA
Description: Transcription of transcription unit aslB; reaction activation by GadE-RcsB.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant aslB gene nd nd
product aslB_mRNA RNA nd nd
fumC fumC_mRNA
Name: fumC -> fumC_mRNA
Description: Transcription of transcription unit fumC; reaction inhibition by Fur-Fe(II).
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fumC_mRNA RNA nd nd
reactant fumC gene nd nd
inaA inaA_mRNA
Name: inaA -> inaA_mRNA
Description: Transcription of transcription unit inaA; reaction activation by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant inaA gene nd nd
product inaA_mRNA RNA nd nd
marRAB marRAB_mRNA
Name: marRAB -> marRAB_mRNA
Description: Transcription of transcription unit marRAB; reaction inhibition by Cra.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant marRAB gene nd nd
product marRAB_mRNA RNA nd nd
micF micF_mRNA
Name: micF -> micF_mRNA
Description: Transcription of transcription unit micF; reaction activation by HU.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product micF_mRNA RNA nd nd
reactant micF gene nd nd
mltF mltF_mRNA
Name: mltF -> mltF_mRNA
Description: Transcription of transcription unit mltF; reaction activation by Rob.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant mltF gene nd nd
product mltF_mRNA RNA nd nd
nfo nfo_mRNA
Name: nfo -> nfo_mRNA
Description: Transcription of transcription unit nfo; reaction activation by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product nfo_mRNA RNA nd nd
reactant nfo gene nd nd
nfsB nfsB_mRNA
Name: nfsB -> nfsB_mRNA
Description: Transcription of transcription unit nfsB; reaction activation by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant nfsB gene nd nd
product nfsB_mRNA RNA nd nd
rob rob_mRNA
Name: rob -> rob_mRNA
Description: Transcription of transcription unit rob; reaction inhibition by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product rob_mRNA RNA nd nd
reactant rob gene nd nd
sodA sodA_mRNA
Name: sodA -> sodA_mRNA
Description: Transcription of transcription unit sodA; reaction inhibition by Fur-Fe(II).
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product sodA_mRNA RNA nd nd
reactant sodA gene nd nd
tolC-ygiABC tolC-ygiABC_mRNA
Name: tolC-ygiABC -> tolC-ygiABC_mRNA
Description: Transcription of transcription unit tolC-ygiABC; reaction activation by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant tolC-ygiABC gene nd nd
product tolC-ygiABC_mRNA RNA nd nd
ybiS ybiS_mRNA
Name: ybiS -> ybiS_mRNA
Description: Transcription of transcription unit ybiS; reaction activation by Rob.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product ybiS_mRNA RNA nd nd
reactant ybiS gene nd nd
ybjC-nfsA-rimK-ybjN ybjC-nfsA-rimK-ybjN_mRNA
Name: ybjC-nfsA-rimK-ybjN -> ybjC-nfsA-rimK-ybjN_mRNA
Description: Transcription of transcription unit ybjC-nfsA-rimK-ybjN; reaction activation by MarA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant ybjC-nfsA-rimK-ybjN gene nd nd
product ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
zwf zwf_mRNA
Name: zwf -> zwf_mRNA
Description: Transcription of transcription unit zwf; reaction inhibition by Cra.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product zwf_mRNA RNA nd nd
reactant zwf gene nd nd
marRAB_mRNA MarA
Name: marRAB_mRNA -> MarA
Description: Translation of MarA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product MarA protein nd nd
reactant marRAB_mRNA RNA nd nd
tolC-ygiABC_mRNA YgiB
Name: tolC-ygiABC_mRNA -> YgiB
Description: Translation of YgiB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YgiB protein nd nd
reactant tolC-ygiABC_mRNA RNA nd nd
acrAB_mRNA AcrA
Name: acrAB_mRNA -> AcrA
Description: Translation of AcrA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant acrAB_mRNA RNA nd nd
product AcrA protein nd nd
AcrA + TolC + AcrB AcrA-TolC-AcrB
Name: AcrA + TolC + AcrB -> AcrA-TolC-AcrB
Description: Reaction transforming AcrA, TolC, AcrB into AcrA-TolC-AcrB
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product AcrA-TolC-AcrB complex nd nd
reactant AcrB protein nd nd
reactant AcrA protein nd nd
reactant TolC protein nd nd
a drug_Ext a drug
Name: a drug_Ext -> a drug
Description: Transport of a drug_Ext through a bacterial membrane, leading to the presence of a drug inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant a drug_Ext simple molecule nd nd
product a drug simple molecule nd nd
AcrD + AcrA + TolC AcrD-AcrA-TolC
Name: AcrD + AcrA + TolC -> AcrD-AcrA-TolC
Description: Reaction transforming AcrD, AcrA, TolC into AcrD-AcrA-TolC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant AcrA protein nd nd
reactant TolC protein nd nd
reactant AcrD protein nd nd
product AcrD-AcrA-TolC complex nd nd
nfo_mRNA Nfo
Name: nfo_mRNA -> Nfo
Description: Translation of Nfo
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant nfo_mRNA RNA nd nd
product Nfo protein nd nd
an AP(apurinic or apyrimidinic) site created by glycosylic bond cleavage AP site removed from DNA
Name: an AP(apurinic or apyrimidinic) site created by glycosylic bond cleavage -> AP site removed from DNA
Description: Reaction transforming an AP(apurinic or apyrimidinic) site created by glycosylic bond cleavage into AP site removed from DNA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product AP site removed from DNA simple molecule nd nd
reactant an AP(apurinic or apyrimidinic) site created by glycosylic bond cleavage simple molecule nd nd
zwf_mRNA Zwf
Name: zwf_mRNA -> Zwf
Description: Translation of Zwf
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant zwf_mRNA RNA nd nd
product Zwf protein nd nd
beta-D-glucose-6-P 6-phosphogluconolactone
Name: beta-D-glucose-6-P -> 6-phosphogluconolactone
Description: Reaction transforming beta-D-glucose-6-P into 6-phosphogluconolactone
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant beta-D-glucose-6-P simple molecule nd nd
product 6-phosphogluconolactone simple molecule nd nd
nfsB_mRNA NfsB
Name: nfsB_mRNA -> NfsB
Description: Translation of NfsB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product NfsB protein nd nd
reactant nfsB_mRNA RNA nd nd
an oxidized nitroaromatic compound a reduced nitroaromatic compound
Name: an oxidized nitroaromatic compound -> a reduced nitroaromatic compound
Description: Reaction transforming an oxidized nitroaromatic compound into a reduced nitroaromatic compound
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant an oxidized nitroaromatic compound simple molecule nd nd
product a reduced nitroaromatic compound simple molecule nd nd
5,6,7,8-tetrahydropteridine 6,7-dihydropteridine
Name: 5,6,7,8-tetrahydropteridine -> 6,7-dihydropteridine
Description: Reaction transforming 5,6,7,8-tetrahydropteridine into 6,7-dihydropteridine
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant 5,6,7,8-tetrahydropteridine simple molecule nd nd
product 6,7-dihydropteridine simple molecule nd nd
rob_mRNA Rob
Name: rob_mRNA -> Rob
Description: Translation of Rob
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant rob_mRNA RNA nd nd
product Rob protein nd nd
tolC-ygiABC_mRNA YgiC
Name: tolC-ygiABC_mRNA -> YgiC
Description: Translation of YgiC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YgiC protein nd nd
reactant tolC-ygiABC_mRNA RNA nd nd
ybjC-nfsA-rimK-ybjN_mRNA YbjC
Name: ybjC-nfsA-rimK-ybjN_mRNA -> YbjC
Description: Translation of YbjC
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
product YbjC protein nd nd
ybjC-nfsA-rimK-ybjN_mRNA RimK
Name: ybjC-nfsA-rimK-ybjN_mRNA -> RimK
Description: Translation of RimK
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
product RimK protein nd nd
a [protein] alpha-L-glutamate + L-glutamate a [protein] α-L-glu-alpha-L-glu + phosphate
Name: a [protein] alpha-L-glutamate + L-glutamate -> a [protein] α-L-glu-alpha-L-glu + phosphate
Description: Reaction transforming a [protein] alpha-L-glutamate, L-glutamate into a [protein] α-L-glu-alpha-L-glu, phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a [protein] α-L-glu-alpha-L-glu simple molecule nd nd
reactant L-glutamate simple molecule nd nd
reactant a [protein] alpha-L-glutamate simple molecule nd nd
product phosphate simple molecule nd nd
ybjC-nfsA-rimK-ybjN_mRNA NfsA
Name: ybjC-nfsA-rimK-ybjN_mRNA -> NfsA
Description: Translation of NfsA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product NfsA protein nd nd
reactant ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
inaA_mRNA InaA
Name: inaA_mRNA -> InaA
Description: Translation of InaA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product InaA protein nd nd
reactant inaA_mRNA RNA nd nd
acrZ_mRNA AcrZ
Name: acrZ_mRNA -> AcrZ
Description: Translation of AcrZ
Type: translation
Components:
Function Name Type Evidence Reference(s)
product AcrZ protein nd nd
reactant acrZ_mRNA RNA nd nd
marRAB_mRNA MarR
Name: marRAB_mRNA -> MarR
Description: Translation of MarR
Type: translation
Components:
Function Name Type Evidence Reference(s)
product MarR protein nd nd
reactant marRAB_mRNA RNA nd nd
micF_mRNA MicF small regulatory RNA
Name: micF_mRNA -> MicF small regulatory RNA
Description: Translation of MicF small regulatory RNA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant micF_mRNA RNA nd nd
product MicF small regulatory RNA RNA nd nd
tolC-ygiABC_mRNA TolC
Name: tolC-ygiABC_mRNA -> TolC
Description: Translation of TolC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product TolC protein nd nd
reactant tolC-ygiABC_mRNA RNA nd nd
TolC + MacB + MacA TolC-MacB-MacA
Name: TolC + MacB + MacA -> TolC-MacB-MacA
Description: Reaction transforming TolC, MacB, MacA into TolC-MacB-MacA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant MacA protein nd nd
reactant MacB protein nd nd
product TolC-MacB-MacA complex nd nd
reactant TolC protein nd nd
a macrolide antibiotic_Ext a macrolide antibiotic + phosphate
Name: a macrolide antibiotic_Ext -> a macrolide antibiotic + phosphate
Description: Transport of a macrolide antibiotic_Ext through a bacterial membrane, leading to the presence of a macrolide antibiotic, phosphate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product phosphate simple molecule nd nd
product a macrolide antibiotic simple molecule nd nd
reactant a macrolide antibiotic_Ext simple molecule nd nd
TolC + MdtE + MdtF TolC-MdtE-MdtF
Name: TolC + MdtE + MdtF -> TolC-MdtE-MdtF
Description: Reaction transforming TolC, MdtE, MdtF into TolC-MdtE-MdtF
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product TolC-MdtE-MdtF complex nd nd
reactant MdtF protein nd nd
reactant TolC protein nd nd
reactant MdtE protein nd nd
AcrE + AcrF + TolC AcrE-AcrF-TolC
Name: AcrE + AcrF + TolC -> AcrE-AcrF-TolC
Description: Reaction transforming AcrE, AcrF, TolC into AcrE-AcrF-TolC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product AcrE-AcrF-TolC complex nd nd
reactant AcrE protein nd nd
reactant TolC protein nd nd
reactant AcrF protein nd nd
EmrA + EmrB + TolC EmrA-EmrB-TolC
Name: EmrA + EmrB + TolC -> EmrA-EmrB-TolC
Description: Reaction transforming EmrA, EmrB, TolC into EmrA-EmrB-TolC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant EmrB protein nd nd
product EmrA-EmrB-TolC complex nd nd
reactant TolC protein nd nd
reactant EmrA protein nd nd
EmrK + EmrY + TolC EmrK-EmrY-TolC
Name: EmrK + EmrY + TolC -> EmrK-EmrY-TolC
Description: Reaction transforming EmrK, EmrY, TolC into EmrK-EmrY-TolC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product EmrK-EmrY-TolC complex nd nd
reactant EmrY protein nd nd
reactant EmrK protein nd nd
reactant TolC protein nd nd
EntS + TolC EntS-TolC
Name: EntS + TolC -> EntS-TolC
Description: Reaction transforming EntS, TolC into EntS-TolC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant TolC protein nd nd
reactant EntS protein nd nd
product EntS-TolC complex nd nd
enterobactin_Ext enterobactin
Name: enterobactin_Ext -> enterobactin
Description: Transport of enterobactin_Ext through a bacterial membrane, leading to the presence of enterobactin inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant enterobactin_Ext simple molecule nd nd
product enterobactin simple molecule nd nd
TolC + MdtC + MdtB + MdtA TolC-MdtC-MdtB-MdtA
Name: TolC + MdtC + MdtB + MdtA -> TolC-MdtC-MdtB-MdtA
Description: Reaction transforming TolC, MdtC, MdtB, MdtA into TolC-MdtC-MdtB-MdtA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant MdtB protein nd nd
reactant TolC protein nd nd
product TolC-MdtC-MdtB-MdtA complex nd nd
reactant MdtC protein nd nd
reactant MdtA protein nd nd
sodA_mRNA SodA
Name: sodA_mRNA -> SodA
Description: Translation of SodA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant sodA_mRNA RNA nd nd
product SodA protein nd nd
superoxide perhydrol + oxygen
Name: superoxide -> perhydrol + oxygen
Description: Reaction transforming superoxide into perhydrol, oxygen
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product oxygen simple molecule nd nd
reactant superoxide simple molecule nd nd
product perhydrol simple molecule nd nd
mltF_mRNA MltF
Name: mltF_mRNA -> MltF
Description: Translation of MltF
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant mltF_mRNA RNA nd nd
product MltF protein nd nd
a peptidoglycan polymer a peptidoglycan polymer with 1,6-anhydromuropeptide end + a peptidoglycan polymer with GlcNAc end
Name: a peptidoglycan polymer -> a peptidoglycan polymer with 1,6-anhydromuropeptide end + a peptidoglycan polymer with GlcNAc end
Description: Reaction transforming a peptidoglycan polymer into a peptidoglycan polymer with 1,6-anhydromuropeptide end, a peptidoglycan polymer with GlcNAc end
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a peptidoglycan polymer with GlcNAc end simple molecule nd nd
reactant a peptidoglycan polymer simple molecule nd nd
product a peptidoglycan polymer with 1,6-anhydromuropeptide end simple molecule nd nd
ybjC-nfsA-rimK-ybjN_mRNA YbjN
Name: ybjC-nfsA-rimK-ybjN_mRNA -> YbjN
Description: Translation of YbjN
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YbjN protein nd nd
reactant ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
acnA_mRNA AcnA
Name: acnA_mRNA -> AcnA
Description: Translation of AcnA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product AcnA protein nd nd
reactant acnA_mRNA RNA nd nd
cis-aconitate I-CIT
Name: cis-aconitate -> I-CIT
Description: Reaction transforming cis-aconitate into I-CIT
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant cis-aconitate simple molecule nd nd
product I-CIT simple molecule nd nd
cit cis-aconitate
Name: cit -> cis-aconitate
Description: Reaction transforming cit into cis-aconitate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product cis-aconitate simple molecule nd nd
reactant cit simple molecule nd nd
marRAB_mRNA MarB
Name: marRAB_mRNA -> MarB
Description: Translation of MarB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant marRAB_mRNA RNA nd nd
product MarB protein nd nd
ybiS_mRNA YbiS
Name: ybiS_mRNA -> YbiS
Description: Translation of YbiS
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YbiS protein nd nd
reactant ybiS_mRNA RNA nd nd
peptidoglycan tetrapeptide, glycan chain 1 + Lpp D-ala + peptidoglycan tripeptide-Lpp crosslink
Name: peptidoglycan tetrapeptide, glycan chain 1 + Lpp -> D-ala + peptidoglycan tripeptide-Lpp crosslink
Description: Reaction transforming peptidoglycan tetrapeptide, glycan chain 1, Lpp into D-ala, peptidoglycan tripeptide-Lpp crosslink
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant peptidoglycan tetrapeptide, glycan chain 1 simple molecule nd nd
reactant Lpp simple molecule nd nd
product D-ala simple molecule nd nd
product peptidoglycan tripeptide-Lpp crosslink simple molecule nd nd
acrAB_mRNA AcrB
Name: acrAB_mRNA -> AcrB
Description: Translation of AcrB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant acrAB_mRNA RNA nd nd
product AcrB protein nd nd
aslB_mRNA AslB
Name: aslB_mRNA -> AslB
Description: Translation of AslB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product AslB protein nd nd
reactant aslB_mRNA RNA nd nd
fumC_mRNA FumC
Name: fumC_mRNA -> FumC
Description: Translation of FumC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FumC protein nd nd
reactant fumC_mRNA RNA nd nd
L-malate fumarate
Name: L-malate -> fumarate
Description: Reaction transforming L-malate into fumarate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product fumarate simple molecule nd nd
reactant L-malate simple molecule nd nd
tolC-ygiABC_mRNA YgiA
Name: tolC-ygiABC_mRNA -> YgiA
Description: Translation of YgiA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YgiA protein nd nd
reactant tolC-ygiABC_mRNA RNA nd nd
oxalacetate L-malate
Name: oxalacetate -> L-malate
Description: Transformation of oxalacetate into L-malate by one, or two/three reactions not shown.
Type: super-reaction
Components:
Function Name Type Evidence Reference(s)
reactant oxalacetate simple molecule nd nd
product L-malate simple molecule nd nd
oxalacetate cit
Name: oxalacetate -> cit
Description: Transformation of oxalacetate into cit by one, or two/three reactions not shown.
Type: super-reaction
Components:
Function Name Type Evidence Reference(s)
product cit simple molecule nd nd
reactant oxalacetate simple molecule nd nd



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