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RhaS Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
L-lactaldehyde L-rhamnose L-rhamnose_Ext L-rhamnulose L-rhamnulose-1-phosphate D-xylulose RhaA RhaB RhaD RhaR RhaS RhaT beta-L-lyxose beta-L-lyxose_Ext DHAP rhaBAD rhaBAD_mRNA rhaSR rhaSR_mRNA rhaT rhaT_mRNA RhaS L-rhamnose


Gensor Unit       
Name: RhaS
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0008993 - rhamnulokinase activity
GO:0016020 - membrane
GO:0016310 - phosphorylation
GO:0019301 - rhamnose catabolic process
GO:0016829 - lyase activity
GO:0005737 - cytoplasm
GO:0008994 - rhamnulose-1-phosphate aldolase activity
GO:0045893 - positive regulation of transcription, DNA-templated
GO:0003677 - DNA binding
GO:0016773 - phosphotransferase activity, alcohol group as acceptor
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Components:
Function Name Type
RNA rhaT_mRNA RNA


Reactions       
Showing 16 reactions
rhaSR rhaSR_mRNA
Name: rhaSR -> rhaSR_mRNA
Description: Transcription of transcription unit rhaSR; reaction activation by RhaR-L-rhamnose.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant rhaSR gene nd nd
product rhaSR_mRNA RNA nd nd
rhaT rhaT_mRNA
Name: rhaT -> rhaT_mRNA
Description: Transcription of transcription unit rhaT; reaction activation by RhaS-L-rhamnose.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant rhaT gene nd nd
product rhaT_mRNA RNA nd nd
RhaS + L-rhamnose RhaS-L-rhamnose
Name: RhaS + L-rhamnose -> RhaS-L-rhamnose
Description: Reaction transforming RhaS, L-rhamnose into RhaS-L-rhamnose
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product RhaS-L-rhamnose complex nd nd
reactant RhaS protein nd nd
reactant L-rhamnose simple molecule nd nd
rhaBAD rhaBAD_mRNA
Name: rhaBAD -> rhaBAD_mRNA
Description: Transcription of transcription unit rhaBAD; reaction activation by RhaS-L-rhamnose.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product rhaBAD_mRNA RNA nd nd
reactant rhaBAD gene nd nd
rhaBAD_mRNA RhaB
Name: rhaBAD_mRNA -> RhaB
Description: Translation of RhaB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant rhaBAD_mRNA RNA nd nd
product RhaB protein nd nd
L-rhamnulose L-rhamnulose-1-phosphate
Name: L-rhamnulose -> L-rhamnulose-1-phosphate
Description: Reaction transforming L-rhamnulose into L-rhamnulose-1-phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product L-rhamnulose-1-phosphate simple molecule nd nd
reactant L-rhamnulose simple molecule nd nd
rhaSR_mRNA RhaS
Name: rhaSR_mRNA -> RhaS
Description: Translation of RhaS
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant rhaSR_mRNA RNA nd nd
product RhaS protein nd nd
rhaSR_mRNA RhaR
Name: rhaSR_mRNA -> RhaR
Description: Translation of RhaR
Type: translation
Components:
Function Name Type Evidence Reference(s)
product RhaR protein nd nd
reactant rhaSR_mRNA RNA nd nd
rhaT_mRNA RhaT
Name: rhaT_mRNA -> RhaT
Description: Translation of RhaT
Type: translation
Components:
Function Name Type Evidence Reference(s)
product RhaT protein nd nd
reactant rhaT_mRNA RNA nd nd
beta-L-lyxose_Ext beta-L-lyxose
Name: beta-L-lyxose_Ext -> beta-L-lyxose
Description: Transport of beta-L-lyxose_Ext through a bacterial membrane, leading to the presence of beta-L-lyxose inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product beta-L-lyxose simple molecule nd nd
reactant beta-L-lyxose_Ext simple molecule nd nd
L-rhamnose_Ext L-rhamnose
Name: L-rhamnose_Ext -> L-rhamnose
Description: Transport of L-rhamnose_Ext through a bacterial membrane, leading to the presence of L-rhamnose inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product L-rhamnose simple molecule nd nd
reactant L-rhamnose_Ext simple molecule nd nd
rhaBAD_mRNA RhaA
Name: rhaBAD_mRNA -> RhaA
Description: Translation of RhaA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant rhaBAD_mRNA RNA nd nd
product RhaA protein nd nd
L-rhamnose L-rhamnulose
Name: L-rhamnose -> L-rhamnulose
Description: Reaction transforming L-rhamnose into L-rhamnulose
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product L-rhamnulose simple molecule nd nd
reactant L-rhamnose simple molecule nd nd
beta-L-lyxose L-xylulose
Name: beta-L-lyxose -> L-xylulose
Description: Reaction transforming beta-L-lyxose into L-xylulose
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant beta-L-lyxose simple molecule nd nd
product L-xylulose simple molecule nd nd
rhaBAD_mRNA RhaD
Name: rhaBAD_mRNA -> RhaD
Description: Translation of RhaD
Type: translation
Components:
Function Name Type Evidence Reference(s)
product RhaD protein nd nd
reactant rhaBAD_mRNA RNA nd nd
L-rhamnulose-1-phosphate L-lactaldehyde + DHAP
Name: L-rhamnulose-1-phosphate -> L-lactaldehyde + DHAP
Description: Reaction transforming L-rhamnulose-1-phosphate into L-lactaldehyde, DHAP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product L-lactaldehyde simple molecule nd nd
product DHAP simple molecule nd nd
reactant L-rhamnulose-1-phosphate simple molecule nd nd



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